View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_7 (Length: 627)
Name: NF11897_low_7
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 23597571 - 23598184
Alignment:
| Q |
1 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597571 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
23597670 |
T |
|
| Q |
101 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597671 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
23597770 |
T |
|
| Q |
201 |
ttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597771 |
ttgcaaccctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgct |
23597870 |
T |
|
| Q |
301 |
ggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597871 |
ggccccaaaattgaggaagttgattaagcggaacttttgtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagta |
23597970 |
T |
|
| Q |
401 |
atatgtatgtgttttggtttaagtagtacagcgagctctatcttatttcaatgtacttttccc----tttaatgttaacaatggtttatgttcctgttct |
496 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
23597971 |
atatgtatgtgttttggtttagctagtacagcgagctctgtcttatttcaatgtacttttccctttatttaatgttaacaatggtttaagttcctgttct |
23598070 |
T |
|
| Q |
497 |
tcatttttcttgttttgacttttgataaattgatcatggattcaaattcgtg-tttatctttctaagttgggtagtttttgttaggattataatcggtta |
595 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23598071 |
tcatttttcttgttttgacttttgataaattgatcatggattcaaattcgtgttttatctttctaagttgggtagtttttgttaggattataatcagtta |
23598170 |
T |
|
| Q |
596 |
agaaatttgaagtg |
609 |
Q |
| |
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|||||||||||||| |
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| T |
23598171 |
agaaatttgaagtg |
23598184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 23588719 - 23589087
Alignment:
| Q |
1 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23588719 |
gtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaaga |
23588818 |
T |
|
| Q |
101 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23588819 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcat |
23588918 |
T |
|
| Q |
201 |
ttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||| |
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| T |
23588919 |
ttgcaaccctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgct |
23589018 |
T |
|
| Q |
301 |
ggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggatttt |
369 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| | |||| ||| ||| |||||||| |||||| |
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| T |
23589019 |
ggccccaaaattgaggaagttgattaagctaaactttgttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 8018423 - 8018633
Alignment:
| Q |
25 |
aactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgaggggg |
124 |
Q |
| |
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||||| || |||||||||||||||||||| |||||||| ||||||| ||| ||| | || |||| || || ||||| ||||| ||||| ||||| | | |
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| T |
8018423 |
aactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgatgcaattgacgctg |
8018522 |
T |
|
| Q |
125 |
ctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggat |
224 |
Q |
| |
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| ||||| |||||||| | || || | | |||||||||||| ||||| || ||||||||||| || ||| | |||||||||| |||||||| | ||| |
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| T |
8018523 |
caattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagat |
8018622 |
T |
|
| Q |
225 |
gtatcaaggtg |
235 |
Q |
| |
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||||||||||| |
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|
| T |
8018623 |
gtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
151 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
235 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| || || ||| | ||||||||||||||||| | |||||| ||||||| |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 8101828 - 8101615
Alignment:
| Q |
22 |
gagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagg |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||| || |||||||| ||||| ||| ||| | || | | || |||||| | ||||| ||||| ||||||| |
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| T |
8101828 |
gagaactatgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagg |
8101729 |
T |
|
| Q |
122 |
gggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaag |
221 |
Q |
| |
|
| || ||||||||| | |||| ||| || |||| || || ||||| ||||| ||||||||||||||||| ||| || || ||||| |||||||||| |
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| T |
8101728 |
gagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaa |
8101629 |
T |
|
| Q |
222 |
gatgtatcaaggtg |
235 |
Q |
| |
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|||||| ||||||| |
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| T |
8101628 |
gatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
145 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
235 |
Q |
| |
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||||| |||| |||||| ||||| |||||||||||||||||||| | || ||| | ||||||||||||||||| | |||||| ||||||| |
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|
| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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