View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_9 (Length: 537)
Name: NF11897_low_9
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 37809509 - 37808996
Alignment:
| Q |
19 |
aatacgacatccactgtcaatcatatgatcagcaatcatcctgatcttattctattggttggagatgctagttatgctaacatgtatcttactaatggca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809509 |
aatacgacatccactgtcaatcatatgatcagcaatcatcctgatcttattctattggttggagatgctagttatgctaacatgtatcttactaatggca |
37809410 |
T |
|
| Q |
119 |
ctggttcagattgctactcttgttcattttctaatactcctatccatgaaacatatcaaccacgttgggattattggggaaggtaaaattttcacttcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37809409 |
ctggttcagattgctactcttgttcattttctaatactcctatccatgaaacatatcaaccacgttgggattattggggaaggtaaaatttttacttcat |
37809310 |
T |
|
| Q |
219 |
cttaattttgacttgagatttcttggttcaaacccagtttatgaaatcaatgttgattatttattcaggtacatggaaccattgatttccagtgtccctg |
318 |
Q |
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| T |
37809309 |
cttaattttgacttgagatttcttggttcaaacccagtttatgaagtcaatgttgattatttattcaggtacatggaaccattgatttccagtgtcccgg |
37809210 |
T |
|
| Q |
319 |
taatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgg |
418 |
Q |
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| T |
37809209 |
taatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgg |
37809110 |
T |
|
| Q |
419 |
atcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgctcggttcctacatatcatacgacaaatcaggttaactcttggtt |
518 |
Q |
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| T |
37809109 |
gtcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgctcggttcctacatatcatacgacaaatcaggttaactcttggtt |
37809010 |
T |
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| Q |
519 |
catcctttgcttct |
532 |
Q |
| |
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|||||||| ||||| |
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| T |
37809009 |
catccttttcttct |
37808996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 263 - 532
Target Start/End: Complemental strand, 37816679 - 37816410
Alignment:
| Q |
263 |
aatcaatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaa |
362 |
Q |
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||||||||| |||||| |||||||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37816679 |
aatcaatgtgaattattgattcaggtacatggaacctctgattgctagtgtcccaataatggtagtggaagggaatcatgagatagaagaacaagctgaa |
37816580 |
T |
|
| Q |
363 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatattattctttcaatgcgggaggaatac |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
37816579 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcagaagagagtggatcatcatccactttctattattctttcaatgcaggaggaatac |
37816480 |
T |
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| Q |
463 |
attttataatgctcggttcctacatatcatacgacaaatcaggttaactcttggttcatcctttgcttct |
532 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
37816479 |
attttataatgctcggtgcctacatatcatacgacaaatcaggttaactcttggttcatcattttcttct |
37816410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 37816977 - 37816787
Alignment:
| Q |
19 |
aatacgacatccactgtcaatcatatgatcagcaatcatcctgatcttattctattggttggagatgctagttatgctaacatgtatcttactaatggca |
118 |
Q |
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||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||| | |
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| T |
37816977 |
aataccacatctactgtcaatcatatgaccggcaatcatcctgatcttattctattggttggtgatgttagttatgctaacctatatcttactaatggta |
37816878 |
T |
|
| Q |
119 |
ctggttcagattgctactcttgttcattttctaatactcctatccatgaaacatatcaaccacgttgggattattggggaaggtaaaattt |
209 |
Q |
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|||||||||||||||| ||||| || ||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37816877 |
ctggttcagattgctattcttgctcgttttcgaatagccccatccaggaaacatatcaaccgcgttgggattattggggaaggtaaaattt |
37816787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 475
Target Start/End: Original strand, 19906755 - 19906911
Alignment:
| Q |
319 |
taatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgg |
418 |
Q |
| |
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||||||| |||||||| |||||||| || ||| |||| ||| |||| ||||||| || ||||| ||||| | ||||| || || || ||||| ||||| |
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| T |
19906755 |
taatggtggtagaaggaaatcatgaaattgaaaaacaggctagaaaccagacatttgtggcttacagttccaggtttgcgttcccctctgaagaaagtgg |
19906854 |
T |
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| Q |
419 |
atcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgct |
475 |
Q |
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||| || || || || || |||||||||||||| || || || |||||||| ||||| |
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| T |
19906855 |
atcgtcatccacattctactattctttcaatgctgggggcattcattttattatgct |
19906911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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