View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11898_high_11 (Length: 357)
Name: NF11898_high_11
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 6638879 - 6638549
Alignment:
| Q |
11 |
cataggaacacatccaagcacaccacttaacgtcaaaaccaaatctcatcagcagattatccaggaaacttcaactcatcgaatcatacccattgacctc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6638879 |
cataggaacacatctaagcacaccacttatcgtcaaaaccaaatctcatcagcagattatccaggaaacttcaaatcatcgaatcatacccattgacctc |
6638780 |
T |
|
| Q |
111 |
gaccaccccatccaccaattgcatgactttaaggaaagttggtttgttggacgagttgattttatccatcaccaacatatttgagaaaaattgttggaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6638779 |
gaccaccccatccaccaattgcatgactttaaggaaagttggtttgttggacgagttgattttatccatcaccaacatatttgagagaaattgttggaaa |
6638680 |
T |
|
| Q |
211 |
agaacgttcatctcctctgtaataagcaaccataatcttttaaattaagagaaattaaaaccccccgaccttggactcttattaccatcactataagtca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6638679 |
agaacgttcatctcctctgtaataagcaaccataatcttttaaattaagagaaattaaaaccccccgaccttggactcttattaccatcactacaagtca |
6638580 |
T |
|
| Q |
311 |
ctaccactactatttcctcttgattaaaagg |
341 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
6638579 |
ctgccactactatttcctcttgattaaaagg |
6638549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 30862551 - 30862493
Alignment:
| Q |
21 |
catccaagcacaccacttaacgtcaaaaccaaatctcatcagcagattatccaggaaac |
79 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
30862551 |
catccaagcacaccacttatcatcaaaaccaaatctcttcaaaagatattccaggaaac |
30862493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 2387043 - 2387116
Alignment:
| Q |
21 |
catccaagcacaccacttaacgtcaaaaccaaatctcatcagcagattatccaggaaacttcaactcatcgaat |
94 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||| |||| || | |||||||| |||||||||| |
|
|
| T |
2387043 |
catccaagcacaccacttatcatcaaaaccaaatctcttcaatagatattcgaaaaaacttcagctcatcgaat |
2387116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University