View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_high_12 (Length: 290)
Name: NF11898_high_12
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_high_12 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 47299602 - 47299331
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299602 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacgatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
47299503 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299502 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
47299403 |
T |
|
| Q |
219 |
attctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagct |
290 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47299402 |
attctttcgccaaatacaattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagct |
47299331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 47292995 - 47292724
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47292995 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacattgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatggctcg |
47292896 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
47292895 |
aggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgcaaccatcttgaatacaaacaa |
47292796 |
T |
|
| Q |
219 |
attctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagagct |
290 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
47292795 |
attttttcgccaaataccattaaggaagaagatactgcttctctagttcatcgatctttcttctttagagct |
47292724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 47242342 - 47242609
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
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||||||||||||| |||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47242342 |
tcaagtgtggtggtttcatattggccttgagtgtgaaccatacaatgggtgatgcagctggtttgagacaattcatgattgcatgggcagaaatggctcg |
47242441 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
47242442 |
aggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgcaaccatcgtgaatacgaacaa |
47242541 |
T |
|
| Q |
219 |
attctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
283 |
Q |
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|| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| |
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| T |
47242542 |
atactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
47242609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 47256470 - 47256737
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
| |
|
||||||||||||| |||||| ||||| ||| || ||||||||||||||| |||| | ||||||| ||||||||| || ||||||||||||||| ||||| |
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| T |
47256470 |
tcaagtgtggtggtttcatattggccttgagtttgaaccatacaatgggtgatggatctggtttaagacaattcgtgtctgcatgggcagaaatagctcg |
47256569 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||| |||||| |
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| T |
47256570 |
aggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccatcgtgaatatgaacaa |
47256669 |
T |
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| Q |
219 |
attctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
283 |
Q |
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|| ||| |||||||||| ||| |||||| |||||||| || | |||||||||||||||||||||| |
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| T |
47256670 |
atacttccgccaaatacgtacatcaaggaagaagatactactattgtagtccatcaatctttcttctt |
47256737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 53 - 286
Target Start/End: Original strand, 47267287 - 47267520
Alignment:
| Q |
53 |
gaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcgaggagcatatcgaccttccattcaacctgtgtgg |
152 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| || ||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| |
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| T |
47267287 |
gaaccatacaatgagcgatggagctggtttgaaactatttatgaatgcctgggcagaaatggctcgaggagcacataaaccttccattcaacctgtatgg |
47267386 |
T |
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| Q |
153 |
aatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagata |
252 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| ||||||| || |||||| |||||| |
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| T |
47267387 |
aatagggagattctaatggcaagagacccaccacacattacatgcaaccatcatgaatacgaacaaattttttcgtcaaatacaatcaaggaagaagata |
47267486 |
T |
|
| Q |
253 |
ctgcttctctagtccatcaatctttcttctttag |
286 |
Q |
| |
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| | | ||||| |||||||||||||||||||| |
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| T |
47267487 |
ccacaaccctagttcatcaatctttcttctttag |
47267520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 47283215 - 47283484
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
| |
|
||||||| ||||| ||||| |||| | | || ||||||||| |||| ||||||||| | ||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
47283215 |
tcaagtgcggtggtttcattgtgggcgtaaactggaaccatgcaattggcgatgcaacaggtttgaaacaattcatgaatgtctgggcagaaatggctcg |
47283314 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
| |
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||||||| ||| ||||||||||||||| || ||| || ||||| ||||||| |||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
47283315 |
aggagcacatcaaccttccattcaaccagtatggcgcagagagatcctaatggctagagaccctccacgcattacttgcaaccatcgtgaatatgaacaa |
47283414 |
T |
|
| Q |
219 |
attctttcgccaaataccattaaggaaaaagatactgcttct---ctagtccatcaatctttcttcttta |
285 |
Q |
| |
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|| ||| || |||||| || |||||| ||||| ||||| || |||||||||||||||||||||||| |
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| T |
47283415 |
atacttacgtcaaatatcaacaaggaagaagatgctgctactaccatagtccatcaatctttcttcttta |
47283484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 285
Target Start/End: Original strand, 47278651 - 47278891
Alignment:
| Q |
48 |
aattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcgaggagcatatcgaccttccattcaacctg |
147 |
Q |
| |
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|||||||| ||| |||| | ||||||| | ||||||| |||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||| | |
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| T |
47278651 |
aattggaatcatgcaattgccgatgcaacaggtttgaaacaatttatgaatgtttgggcagaaatggctcgaggagcacatcaaccttccattcaaccgg |
47278750 |
T |
|
| Q |
148 |
tgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaa |
247 |
Q |
| |
|
| ||| || ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| |||||| || |||||| | |
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| T |
47278751 |
tatggcgcagagagatcctaatggcaagagaccctccacgtgttacttgcaaccatcatgaatacgaacaaatactttcgtcaaatatcaacaaggaaga |
47278850 |
T |
|
| Q |
248 |
aga---tactgcttctctagtccatcaatctttcttcttta |
285 |
Q |
| |
|
||| | ||||| | |||||||||| ||||||||||||| |
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| T |
47278851 |
agatgttgctgctaccatagtccatcactctttcttcttta |
47278891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 32731013 - 32731280
Alignment:
| Q |
19 |
tcaagtgtggtgggttcatagtggccatgaattggaaccatacaatgggcgatgcagctggtttgagacaattcatgaatgcatgggcagaaatggctcg |
118 |
Q |
| |
|
||||||||||||| |||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32731013 |
tcaagtgtggtggtttcatattggccttgagtgtgaaccatacaatgggtgatgcagctggtttgagacaattcatgactgcatgggcagaaatggctcg |
32731112 |
T |
|
| Q |
119 |
aggagcatatcgaccttccattcaacctgtgtggaatagggagattttaatggcaagagaccctccacgcattacatgcaaccattttgaatacgaacaa |
218 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
32731113 |
aggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgcaaccatcgtgaatacgaacaa |
32731212 |
T |
|
| Q |
219 |
attctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttctt |
283 |
Q |
| |
|
|| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| |
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| T |
32731213 |
atactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttctt |
32731280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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