View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11898_high_2 (Length: 676)

Name: NF11898_high_2
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11898_high_2
NF11898_high_2
[»] chr7 (1 HSPs)
chr7 (1-665)||(47223802-47224466)


Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Complemental strand, 47224466 - 47223802
Alignment:
Q  1 tatctaggacatgatgtcatacaatacatttccagaagcacggatcgacgtagtcaaagcagtttctgatggattctaacaaaagaacactaagtatgta 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47224466 tatctaggacatgatgtcataaaatacatttccagaagcacggatcaacgtagtcaaagcagtgtctgatggattctaacaaaagaacactaagtatgta 47224367  T
Q  101 attgggagtagcaattatgacgctgtgaagtgtgaccgttcaagctacgctgtgacattgttacatgacaatgatcgctctaattccgaacatgctatat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  47224366 attgggagttgcaattatgacgctgtgaagtgtgaccgttcaagctacgctgtgacattgttacatgacaatgatcgctctaattacaaacatgctatat 47224267  T
Q  201 aatatattgaattcttcaagggtaatataagcaattaataaaatgatgaaggtattattagttaagaagaaagattacttcagccatatttttaggcatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47224266 aatatattgaattcttcaagggtaatataagcaattaataaaatgatgaaggtattattagttaagaagaaagattacttcagccatatttttaggcatg 47224167  T
Q  301 ggttttccttcttggtttaacttttgaatcttcttgtgtgcttctttagcccaagtaaactttgcaagtgcattctccacttcagcaattgtgcaattac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47224166 ggttttccttcttggtttaacttttgaatcttcttgtgtgcttctttagcccaagtaaactttgcaagtgcattctccacttcagcaattgtgcaattac 47224067  T
Q  401 aatgtttcgaagcttcatgtttttgattcgtcgtcaagttctaaccaattaaccataacaaaacaaaatcaacaaatgcagaacattctagtaataataa 500  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47224066 aatgtttcgcagcttcatgtttttgattcgtcgtcaagttctaaccaattaaccataacaaaacaaaatcaacaaatgcagaacattctagtaataataa 47223967  T
Q  501 ttcaaacaaattaatacagtttaatctaacctctccggtgtaatcgaaagctgcgagatatcgaataatgacttcgtatttctcaatggcagtagaaaaa 600  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47223966 ttcaaacaaattaatacagtttaatctaacctctcctgtgtaatcgaaagctgcgagatatcgaataatgacttcgtatttctcaatggcagtagaaaaa 47223867  T
Q  601 gtaacttcgctacttcgtccaactatatactctttaaacgcaccaacttttcttgctttcttcat 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47223866 gtaacttcgctacttcgtccaactatatactctttaaacgcaccaacttttcttgctttcttcat 47223802  T

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