View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_high_5 (Length: 534)
Name: NF11898_high_5
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 172 - 518
Target Start/End: Original strand, 4136626 - 4136950
Alignment:
| Q |
172 |
aaatcaacattctcattatcaaatacaatttctgttttatttccctttctatgcttttctgttatccatgtacttccatctagaattgtaatatcgacaa |
271 |
Q |
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| T |
4136626 |
aaatcaacattctcattatcaaatacaatttctgttttatttccctttctatgcttttctgttatccatgtacttccatctagaattgta---------- |
4136715 |
T |
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| Q |
272 |
tgtggctatagaaaatttgaatccctcaatgagagattcaatatcattgaaaatgaaatatatgcaccgtaaaataagttcgaatagtgtaaaatataac |
371 |
Q |
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| T |
4136716 |
------------aaatttgaatccctcaatgagagattcaatgtcattgaaaatgaaatatatgcaccgtaaaataaattcgaatagtgtaaaatataac |
4136803 |
T |
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| Q |
372 |
ctggtctggtcacttatcatcaagcatttgaatccatcgccggctctatatattcggaaagatattgtagtcctctctgtttggtcttttgatgctaaag |
471 |
Q |
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| T |
4136804 |
ctggtctggtcacttatcatcaagcatttgaatccatcgccggctctatatattcggaaagatattgtagtcctctctgtttggtcttttgatgctaaag |
4136903 |
T |
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| Q |
472 |
cttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgt |
518 |
Q |
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| T |
4136904 |
cttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgt |
4136950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 249 - 518
Target Start/End: Original strand, 4127904 - 4128175
Alignment:
| Q |
249 |
atctagaattgtaatatcgacaatgtggctatagaaaatttgaatccctcaatgagagattcaatatcattgaaaa-tgaaatatatgcaccgtaaaata |
347 |
Q |
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| T |
4127904 |
atctataattgtaatatcgacaatgtggatgtagaaaatttgaatacttcaaagagagattcgatgtcattgaaaaatgaaatgtatgcactgcagaata |
4128003 |
T |
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| Q |
348 |
agttcgaatagtgtaaaata-taacctggtctggtcacttatcatcaagcatttgaatccatcgccggctctatatattcggaaagatattgtagtcctc |
446 |
Q |
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| T |
4128004 |
agtttgaagagtgtaaaaaaataacctggtctggtcacttatcatcaaacatttataatgatccgcgactctatatatccggaaagatattgtagtcttc |
4128103 |
T |
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| Q |
447 |
tctgtttggtcttttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgt |
518 |
Q |
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| T |
4128104 |
tctgtctggtcttttgatgctaaggcttgcaaaccaaatggccctatcatgcattttcttgatgcatattgt |
4128175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 370 - 518
Target Start/End: Original strand, 4141708 - 4141856
Alignment:
| Q |
370 |
acctggtctggtcacttatcatcaagcatttgaatccatcgccggctctatatattcggaaagatattgtagtcctctctgtttggtcttttgatgctaa |
469 |
Q |
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| T |
4141708 |
acctggtctggtcacttatcatcaagcatttatattcatcgctgactctatatattcggaaagatattgtagttctctctgtctggtcttctgatgctaa |
4141807 |
T |
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| Q |
470 |
agcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgt |
518 |
Q |
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| T |
4141808 |
agcttgcaaaccaaatggccctatcatgccttttattgatgcatattgt |
4141856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 4136521 - 4136626
Alignment:
| Q |
36 |
atgaagacctgtaaattttgcaaaacttaatttcatgagctctagtcttgatcatttgttgagatataatcgttcaatgtttatctaatggccgagatct |
135 |
Q |
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| T |
4136521 |
atgaagacctgtaaattttgcaaaacttaatttcatgagctctagtcttgatcatttgttgagatataatcgttcaatgtttatctaatggccgagatct |
4136620 |
T |
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| Q |
136 |
actata |
141 |
Q |
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||||| |
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| T |
4136621 |
gctata |
4136626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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