View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_high_6 (Length: 533)
Name: NF11898_high_6
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 44360779 - 44361153
Alignment:
| Q |
14 |
cagagactattgagagatgcaataatatgaatataggtatattgtaattagatttgattacctgaggggtgctacgggggtaatgaatagaaccagagaa |
113 |
Q |
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| T |
44360779 |
cagagactattgagagatgcaataatatgaatataggtatattgtacgtagatttgattacctgaggggtgctacgggggtaatgaatagaaccagagaa |
44360878 |
T |
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| Q |
114 |
gagaatatttctttgtccattgatgataagggatcttccatcatatgttacctcttctgcacctttgactccaaaacttaattccaatattgctaccaac |
213 |
Q |
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| T |
44360879 |
gagaatatttctttgtccattgatgataagagatcttccatcatatgttacctcttctgcacctttgactccaaaacttaattccaatattgctaccaac |
44360978 |
T |
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| Q |
214 |
atcatcatcaaacacacccatttttccatctccactaatttaatttgtcatacctctttagttatcttaataatactcctatgtgacactgcaaattaag |
313 |
Q |
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| T |
44360979 |
atcatcatcaaacacacccatttttccatctccactaatttaatttgtcacacctctttagttatcttaataatactcctatttgacactgcaaattaag |
44361078 |
T |
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| Q |
314 |
ctatatgtatgtatatataagtaacaaattaaatatatacgcggcaagagtgaatcttttataacggtgttaatgtggcctaat |
397 |
Q |
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| T |
44361079 |
cta----tatgtatatataagtaac-----aaatatatacgcggcaagagtgaatcttttataacggtgttaatgtggcctaat |
44361153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 44361204 - 44361269
Alignment:
| Q |
448 |
tcacaattgaagtgggtgatgagaatattttggggtgggactagtttttctttacattgtgtatgc |
513 |
Q |
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| T |
44361204 |
tcacaattgaagtgggtgatgagaatattttggggtgggactagtttttctttacattgtgtatgc |
44361269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 40097615 - 40097571
Alignment:
| Q |
72 |
tacctgaggggtgctacgggggtaatgaatagaaccagagaagag |
116 |
Q |
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| T |
40097615 |
tacctgaggagtgctacgaggataatgaattgaaccagagaagag |
40097571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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