View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11898_high_7 (Length: 504)

Name: NF11898_high_7
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11898_high_7
NF11898_high_7
[»] chr5 (16 HSPs)
chr5 (1-471)||(9659778-9660258)
chr5 (1-246)||(12109026-12109272)
chr5 (411-466)||(10102894-10102949)
chr5 (144-218)||(12104402-12104475)
chr5 (412-466)||(13856106-13856160)
chr5 (67-116)||(10101577-10101626)
chr5 (68-116)||(9661665-9661713)
chr5 (33-76)||(12104290-12104333)
chr5 (412-466)||(10109391-10109445)
chr5 (412-466)||(10212244-10212298)
chr5 (72-113)||(10102093-10102134)
chr5 (417-466)||(10209698-10209747)
chr5 (72-116)||(10213973-10214017)
chr5 (68-116)||(12110140-12110188)
chr5 (411-466)||(10105978-10106033)
chr5 (412-440)||(10215876-10215904)
[»] chr1 (1 HSPs)
chr1 (421-466)||(45152083-45152128)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 9659778 - 9660258
Alignment:
Q  1 ctgttaattttaattgacataaacagtacacttccaaagcagaattcttctgaggtgaaaagtgttctttaaaaagcatgcaacttttaatgaaaaactt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9659778 ctgttaatttaaattgacataaacagtacacttccaaagcagaattcttctgaggtgaaaagtgttctttaaaaagcatgcaacttttaatgaaaatctt 9659877  T
Q  101 cataccataacttgaaaatgtttacaggataaacttgctactgttaaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgtaaaat 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9659878 catacgataacttgaaaatgtttacaggataaacttgctactgttaaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgttaaat 9659977  T
Q  201 ctaacctatcatgaaaagaacaaagtggctcctaactcattgaaatggttccaaaatctggaaac----------atagaagaattttttatatgaaaat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||| ||| |||||||||||||||||    
T  9659978 ctaacctatcatgaaaagaacaaagtggctcctaactcattgaaatggttacaaaatctggaaacaataccaaatataaaagcattttttatatgaaaat 9660077  T
Q  291 tccaaagtgagtgttaaaaacaaaaacccattatattagtccacatcacttaataacagtaaaatttactacactcggccattgaaatggcacttagaat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9660078 tccaaagtgagtgttaaaaacaaaaacccattatattagtccacaccacttaataacagtaaaatttactacactcggccatcgaaatggcacttagaat 9660177  T
Q  391 tagaataccaatagcaaccaaaaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaactggcat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  9660178 tagaataccaatagcaaccaaaaaatattgaactaaaattgcagagcactccatgaataggactcttccaaaaactggcat 9660258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 12109026 - 12109272
Alignment:
Q  1 ctgttaattttaattgacataaacagtacacttccaaagcagaattcttctgaggtgaaaagtgttctttaaaaagcatgcaacttttaatgaaaaactt 100  Q
    |||||||||||| ||| |||||||| ||  | | ||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||     
T  12109026 ctgttaattttacttggcataaacattatccattcaatgcaaaactcttctgaggtgaaaagtgttctttaaaaagcatgcaacttctaatataaatctc 12109125  T
Q  101 cataccataacttgaaaatgtttacagga-taaacttgctactgttaaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgtaaaa 199  Q
    ||||| ||||||||||||||| || |||| | | || ||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  12109126 catacgataacttgaaaatgtgtaaaggaatcagctagctactggtaaggaaatcaacttgcaaaactatatacaactttttacaatgtcagctgtaaaa 12109225  T
Q  200 tctaacctatcatgaaaagaacaaagtggctcctaactcattgaaat 246  Q
    ||| |||||| |||||||| ||||||||| ||||| |||||||||||    
T  12109226 tcttacctataatgaaaagtacaaagtgggtcctagctcattgaaat 12109272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 10102949 - 10102894
Alignment:
Q  411 aaaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    ||||||||||||||||| |||||||||||||  |||| ||||||||||||||||||    
T  10102949 aaaaatattgaactaaatttgcagagccctcaatgaagaggactcttccaaaaact 10102894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 12104402 - 12104475
Alignment:
Q  144 ttaaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgtaaaatctaacctatcatgaaaag 218  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||| || |||||||||| ||| |||||||||||    
T  12104402 ttaaaggaatcaa-ttgcaaaactatttacaactttttataatgtgagttgtaaaatcttacccatcatgaaaag 12104475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 13856160 - 13856106
Alignment:
Q  412 aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  13856160 aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaact 13856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 10101626 - 10101577
Alignment:
Q  67 ctttaaaaagcatgcaacttttaatgaaaaacttcataccataacttgaa 116  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  10101626 ctttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaa 10101577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 9661665 - 9661713
Alignment:
Q  68 tttaaaaagcatgcaacttttaatgaaaaacttcataccataacttgaa 116  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  9661665 tttaaaaagcatgcaacttttattgaaaaccttcatacgataacttgaa 9661713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 12104290 - 12104333
Alignment:
Q  33 tccaaagcagaattcttctgaggtgaaaagtgttctttaaaaag 76  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  12104290 tccaaagcagaactcttctgacgtgaaaagtgttctttaaaaag 12104333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 10109445 - 10109391
Alignment:
Q  412 aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    |||| ||| |||||||||||||||||||||| | || ||||||||||||||||||    
T  10109445 aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaact 10109391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 10212244 - 10212298
Alignment:
Q  412 aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    ||||||||| ||||||||||||||||| || ||||  ||||||||||||||||||    
T  10212244 aaaatattgtactaaaattgcagagccttcggtgaggaggactcttccaaaaact 10212298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 10102134 - 10102093
Alignment:
Q  72 aaaagcatgcaacttttaatgaaaaacttcataccataactt 113  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  10102134 aaaagcatgtaacttttaatgaaaaacttcatacgataactt 10102093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 466
Target Start/End: Original strand, 10209698 - 10209747
Alignment:
Q  417 attgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    |||||||||||||||||||||||||| | || || |||||||||||||||    
T  10209698 attgaactaaaattgcagagccctccataaagagaactcttccaaaaact 10209747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 10213973 - 10214017
Alignment:
Q  72 aaaagcatgcaacttttaatgaaaaacttcataccataacttgaa 116  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  10213973 aaaagcatgtaacttttaatgaaaaccttcatacgataacttgaa 10214017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 12110140 - 12110188
Alignment:
Q  68 tttaaaaagcatgcaacttttaatgaaaaacttcataccataacttgaa 116  Q
    |||||||||||||||||||||| |||||| ||||||||  |||||||||    
T  12110140 tttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaa 12110188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 10106033 - 10105978
Alignment:
Q  411 aaaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    ||||| ||||||||||| |||||||||||||  | || ||||||||||||||||||    
T  10106033 aaaaaaattgaactaaatttgcagagccctcaataaagaggactcttccaaaaact 10105978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 10215876 - 10215904
Alignment:
Q  412 aaaatattgaactaaaattgcagagccct 440  Q
    |||||||||||||||||||||||||||||    
T  10215876 aaaatattgaactaaaattgcagagccct 10215904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 45152128 - 45152083
Alignment:
Q  421 aactaaaattgcagagccctccgtgaataggactcttccaaaaact 466  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||    
T  45152128 aactaatattgcagagccctccgtaaagaggactcttccaaaaact 45152083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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