View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_1 (Length: 797)
Name: NF11898_low_1
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 719; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 13 - 787
Target Start/End: Complemental strand, 15421148 - 15420374
Alignment:
| Q |
13 |
catcacaaagaagacaagtttcaaaccattgaatttctctcctctcaaaacaatgttctttcttggttttttgtttcctcaaccaacattctaacaacct |
112 |
Q |
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| T |
15421148 |
catctcaaagaagacaagtttcaaaccattgaatttctctcctctcaaaacaatgttctttcttggttttttgtttcctcaaccaacattctaacaacct |
15421049 |
T |
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| Q |
113 |
taattattgtaacataaaaaa--taaaaggaacaaagtacattgcattacattatttcaaacaaaactcttcaaaagctttccaataagtatgaacctat |
210 |
Q |
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| T |
15421048 |
taattattgtaacaaaaaaaaaataaaaggaacaaagtacattgcattacattatttcaaacaaaactcttcaaaagctttccaataagtatgaacctat |
15420949 |
T |
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| Q |
211 |
ttggtggcaagccaccacaaggaggggcgaagtttacacgccggacatcaagcggacgagtagtgagtctatcaagagatgatgacatggatatgtccga |
310 |
Q |
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| T |
15420948 |
ttggtggcaagccaccacaaggaggggcgaagtttacacgccggacatcaagcggacgagtagtgagtctatcaagagatgatgacatggatatgtccgg |
15420849 |
T |
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| Q |
311 |
tgaatttgccggccaaaatgattatatcaattacacagttatgatgccaccaacaccagataatcagcccggaacatctgattcaaagcaagggactaca |
410 |
Q |
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| T |
15420848 |
tgagtttgctggccaaaatgattatatcaattacaccgttatgatgccaccaacaccagataatcagcccggaacatctgattcaaagcaagggactaca |
15420749 |
T |
|
| Q |
411 |
agatttgcctcggatactcaacaaggaaggggtgctggcggaggtggtgcatctaaaatggatagaagaatgtcggtgttgagctcggaaaataataagt |
510 |
Q |
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| T |
15420748 |
agatttgcctcggatactcaacaaggaaggggtgctggcggaggtggtgcatctaaaatggatagaagaatgtcggtgttgagctcggaaaataataagt |
15420649 |
T |
|
| Q |
511 |
ctatgttattaaggagccaaactcaagattttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatga |
610 |
Q |
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| T |
15420648 |
ctatgttattaaggagccaaactcaagattttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggcaagatga |
15420549 |
T |
|
| Q |
611 |
tccaaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctata |
710 |
Q |
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| T |
15420548 |
tccaaattcttttggagatgaatgtgaaatgagcatgtcagattttatggacaaaccttggaaaccattaactagaaaagttcaaattccaggcgctata |
15420449 |
T |
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| Q |
711 |
ctcagtccttataggtacctttcttaattatggtatatagtttttgttgcaatatgtataaaggttatatgtctatg |
787 |
Q |
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| T |
15420448 |
ctcagtccttataggtacctttcttaattatgctatatagtttttgttacaata--tttaaaggttatatgtctatg |
15420374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 14599210 - 14599147
Alignment:
| Q |
540 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc |
603 |
Q |
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|||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||||| ||||| |
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| T |
14599210 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc |
14599147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 14609304 - 14609359
Alignment:
| Q |
540 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgc |
595 |
Q |
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|||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||| |
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| T |
14609304 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgc |
14609359 |
T |
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