View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_10 (Length: 453)
Name: NF11898_low_10
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_10 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 28538 - 28134
Alignment:
| Q |
17 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28538 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa--------- |
28448 |
T |
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| Q |
117 |
cttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28447 |
-----catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
28353 |
T |
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| Q |
217 |
gtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagatttcatattaagtggctgcactttgagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28352 |
gtcactgatgaagttgtggctgcatcaacatcaatgatataaaagttcatattatgtaggtgactttatagatttcatattaagtggctgcactttgagt |
28253 |
T |
|
| Q |
317 |
accctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttgaagaatctttaagatatttattttaaatttttagt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28252 |
accctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaaggagttgaagaatctttaagatatttattttaaatttttagt |
28153 |
T |
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| Q |
417 |
tttactcaacagtactctc |
435 |
Q |
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| T |
28152 |
tttactcaacaatactctc |
28134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 26396252 - 26395848
Alignment:
| Q |
17 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396252 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa--------- |
26396162 |
T |
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| Q |
117 |
cttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
216 |
Q |
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| T |
26396161 |
-----catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
26396067 |
T |
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| Q |
217 |
gtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagatttcatattaagtggctgcactttgagt |
316 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26396066 |
gtcactgatgaagttgtcgctgcatcaatatcaatggtataaaagttcatattatgtaggtgactttatagatttcatattaagtggctgcacattgagt |
26395967 |
T |
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| Q |
317 |
accctgttaattatctcccattttctgctcatttgtcaggcaaaacagtagagttcaagaagttgaagaatctttaagatatttattttaaatttttagt |
416 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26395966 |
accctgttaattatctcccattttctgttcatctgtcaggcaaaacaatagagttcaaggagttgaagaatctttaagatatttattttaaatttttagt |
26395867 |
T |
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| Q |
417 |
tttactcaacagtactctc |
435 |
Q |
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||||||||||||||||||| |
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| T |
26395866 |
tttactcaacagtactctc |
26395848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 275648 - 275446
Alignment:
| Q |
17 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275648 |
gaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa--------- |
275558 |
T |
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| Q |
117 |
cttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275557 |
-----catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
275463 |
T |
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| Q |
217 |
gtcactgatgaagttgt |
233 |
Q |
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||| ||||||||||||| |
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| T |
275462 |
gtcgctgatgaagttgt |
275446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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