View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11898_low_11 (Length: 379)

Name: NF11898_low_11
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11898_low_11
NF11898_low_11
[»] chr8 (8 HSPs)
chr8 (153-372)||(8766538-8766756)
chr8 (39-101)||(19756416-19756478)
chr8 (44-101)||(1028780-1028837)
chr8 (19-88)||(28300125-28300194)
chr8 (51-96)||(42445824-42445869)
chr8 (53-101)||(13147732-13147780)
chr8 (33-101)||(9429759-9429827)
chr8 (46-96)||(24182629-24182679)
[»] chr3 (13 HSPs)
chr3 (18-96)||(54240641-54240719)
chr3 (19-101)||(38745281-38745363)
chr3 (18-90)||(9737575-9737647)
chr3 (52-100)||(52910377-52910425)
chr3 (52-95)||(11988925-11988968)
chr3 (52-90)||(41259952-41259990)
chr3 (53-102)||(51829544-51829593)
chr3 (38-95)||(36786566-36786624)
chr3 (38-84)||(21177040-21177086)
chr3 (53-90)||(6757309-6757346)
chr3 (35-92)||(12111035-12111092)
chr3 (52-81)||(17002967-17002996)
chr3 (47-95)||(33440042-33440090)
[»] chr2 (13 HSPs)
chr2 (38-95)||(14368410-14368467)
chr2 (53-96)||(37123628-37123671)
chr2 (19-101)||(34319803-34319885)
chr2 (56-101)||(20156979-20157024)
chr2 (19-87)||(44287829-44287897)
chr2 (56-101)||(34028164-34028209)
chr2 (35-95)||(31068887-31068947)
chr2 (52-90)||(8915635-8915673)
chr2 (52-90)||(38690796-38690834)
chr2 (38-75)||(9198943-9198980)
chr2 (38-83)||(9932020-9932065)
chr2 (62-91)||(32087341-32087370)
chr2 (52-80)||(9294131-9294159)
[»] chr7 (21 HSPs)
chr7 (19-101)||(47684475-47684557)
chr7 (54-96)||(7683451-7683493)
chr7 (52-101)||(27227252-27227301)
chr7 (38-95)||(27744635-27744692)
chr7 (19-96)||(32958527-32958604)
chr7 (53-101)||(25091232-25091280)
chr7 (18-85)||(13054632-13054699)
chr7 (47-101)||(9667219-9667273)
chr7 (52-90)||(23198524-23198562)
chr7 (45-90)||(24250145-24250190)
chr7 (56-101)||(40097904-40097949)
chr7 (52-101)||(44165875-44165923)
chr7 (19-90)||(45725122-45725193)
chr7 (44-90)||(23982078-23982124)
chr7 (49-95)||(29551166-29551212)
chr7 (52-90)||(37307730-37307768)
chr7 (170-203)||(4225737-4225770)
chr7 (53-90)||(30745962-30745999)
chr7 (53-90)||(41780531-41780568)
chr7 (61-90)||(45967360-45967389)
chr7 (55-91)||(39584252-39584288)
[»] chr5 (13 HSPs)
chr5 (19-88)||(20706543-20706612)
chr5 (52-96)||(30327726-30327770)
chr5 (38-95)||(43405998-43406055)
chr5 (53-100)||(5002005-5002052)
chr5 (19-90)||(8032897-8032968)
chr5 (19-101)||(24793512-24793594)
chr5 (38-84)||(31478693-31478739)
chr5 (170-232)||(5476234-5476292)
chr5 (52-101)||(32398287-32398336)
chr5 (53-101)||(28282407-28282455)
chr5 (52-101)||(15409223-15409272)
chr5 (45-86)||(39968978-39969019)
chr5 (47-95)||(10524881-10524929)
[»] chr4 (22 HSPs)
chr4 (19-96)||(31351666-31351743)
chr4 (19-90)||(35010382-35010453)
chr4 (56-102)||(9460236-9460282)
chr4 (47-101)||(13538243-13538297)
chr4 (19-88)||(35130612-35130681)
chr4 (57-94)||(54733272-54733309)
chr4 (182-255)||(39721530-39721599)
chr4 (19-90)||(38415494-38415565)
chr4 (54-101)||(49479529-49479576)
chr4 (19-101)||(17882233-17882313)
chr4 (47-90)||(42721498-42721543)
chr4 (52-90)||(50263989-50264027)
chr4 (52-85)||(28091333-28091366)
chr4 (51-96)||(42657572-42657617)
chr4 (45-85)||(1939999-1940039)
chr4 (53-101)||(7921656-7921704)
chr4 (35-90)||(40981785-40981840)
chr4 (52-90)||(45333451-45333491)
chr4 (52-90)||(45341141-45341181)
chr4 (38-86)||(3746390-3746438)
chr4 (18-102)||(25273056-25273139)
chr4 (47-87)||(38438367-38438407)
[»] chr1 (6 HSPs)
chr1 (38-90)||(2098802-2098854)
chr1 (53-91)||(2661631-2661669)
chr1 (56-101)||(1927612-1927657)
chr1 (18-90)||(8757273-8757345)
chr1 (51-91)||(35997048-35997088)
chr1 (47-91)||(13350821-13350865)
[»] chr6 (10 HSPs)
chr6 (35-90)||(8176965-8177020)
chr6 (46-101)||(12654485-12654540)
chr6 (33-95)||(21023680-21023742)
chr6 (21-90)||(7339536-7339604)
chr6 (52-96)||(7326324-7326368)
chr6 (52-90)||(5925652-5925690)
chr6 (52-90)||(6922633-6922671)
chr6 (52-94)||(12606721-12606763)
chr6 (52-91)||(24896867-24896906)
chr6 (18-102)||(20599382-20599463)
[»] scaffold0178 (1 HSPs)
scaffold0178 (39-89)||(9703-9753)
[»] scaffold0166 (1 HSPs)
scaffold0166 (19-101)||(35895-35977)
[»] scaffold0040 (1 HSPs)
scaffold0040 (38-95)||(58639-58696)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 153 - 372
Target Start/End: Complemental strand, 8766756 - 8766538
Alignment:
Q  153 tatctactattttacggaaaataatagttttagtagttttatttgggctaactagttttattcgaccaagttcatttgtaaccctaacaatcgttaattg 252  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||| ||||||||    
T  8766756 tatctactatttcactgaaaataatagttttagtagttttatttgggctaactagttttattagtacaagttcatttgtaatcctaacaattgttaattg 8766657  T
Q  253 gaagagaaaaatgagatatcatctttctttaatattttgttcttataaacatctcattcttgtaaaacattgtttggtgaaaatttgatatggctatagc 352  Q
     || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8766656 aaaaa-aaaaatgagatatcatctttctttaatattttgttcttataaacatctcattcttgtaaaatattgtttggtgaaaatttgatatggctatagc 8766558  T
Q  353 catactaagtcctatgctac 372  Q
    ||||||||||| ||||||||    
T  8766557 catactaagtcttatgctac 8766538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 19756478 - 19756416
Alignment:
Q  39 aacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  19756478 aacctcggaatccccacttctccacacataatgtgtgtgaatctagccactaggctacctgac 19756416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 1028780 - 1028837
Alignment:
Q  44 cggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||| | ||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  1028780 cggattcttcacttcttcatacataatgtgtgtgaatctagccactagactacctgac 1028837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28300125 - 28300194
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccac 88  Q
    |||||||||| | || || ||||| ||||||  ||||||||||| |||||||||||||||||||||||||    
T  28300125 tgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagccac 28300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 42445824 - 42445869
Alignment:
Q  51 tccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  42445824 tccacttttctacacataatgtgtgtgaatctagccactaaactac 42445869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 13147780 - 13147732
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  13147780 cacttcttcacacataatgtgtgtgaatctagccactagactacttgac 13147732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 9429759 - 9429827
Alignment:
Q  33 gatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||| |||||| |||||||||||| |||| | |||||||||||||||||  ||| ||||||| |||||    
T  9429759 gatttaaacctcagattttccacttatccatatataatgtgtgtgaatcttaccaataaactatctgac 9429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 24182679 - 24182629
Alignment:
Q  46 gattttccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||| ||||||||||||||||| | ||||||||||| |||||| ||||    
T  24182679 gattttctacttctccacacataatatctgtgaatctagtcactaagctac 24182629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 54240641 - 54240719
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  54240641 atgtgcaggggtcggggttcgaacctcggattttccacttctccacgcataatgtgtgtgaatctaaccactagactac 54240719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 38745363 - 38745281
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||| ||||| ||||| || |||  ||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  38745363 tgtgcaggggtcgggattcgaaccccgaattccccacttctccacacaaaatgtgtgtgaatctagccactagactacttgac 38745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9737647 - 9737575
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||||||| || |||||||| |||||| | ||||| ||||||||||||||||||| || ||||||    
T  9737647 atgtgcaggggtcagggttcgaacctcgaattttctatttctctacacataatgtgtgtgaatataaccacta 9737575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 52910425 - 52910377
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactacctga 100  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  52910425 ccacttctccacacataatgtgtgtgaatctagtcactagactacctga 52910377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 11988968 - 11988925
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  11988968 ccacttctccacacataatgtgtgtgaatctagccactagacta 11988925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 41259990 - 41259952
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41259990 ccacttctccacacataatgtgtgtgaatctagccacta 41259952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 51829593 - 51829544
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctgacc 102  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  51829593 cacttctccacacataatgtatgtgaatctagccactatactacttgacc 51829544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 36786624 - 36786566
Alignment:
Q  38 gaacctcggattttcca-cttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||||||||||  ||| |||||||||||||||| |||||||||||||||||| |||||    
T  36786624 gaacctcggattccccaacttctccacacataatatgtgtgaatctagccactgaacta 36786566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 21177086 - 21177040
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctag 84  Q
    |||||||| |||  ||||||||||||||||||||||||| |||||||    
T  21177086 gaacctcgaattccccacttctccacacataatgtgtgtaaatctag 21177040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 6757309 - 6757346
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  6757309 cacttttccacacataatgtgtgtaaatctagccacta 6757346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 12111092 - 12111035
Alignment:
Q  35 tttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaa 92  Q
    |||||||| | |||| |||| |||||||| |||||||||  |||||||||||||||||    
T  12111092 tttgaaccccagattctccatttctccacgcataatgtgaatgaatctagccactaaa 12111035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 17002967 - 17002996
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatc 81  Q
    ||||||||||||||||||||||||||||||    
T  17002967 ccacttctccacacataatgtgtgtgaatc 17002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 33440042 - 33440090
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||||||| | | ||||||||||||||||||||||| |||||| ||||    
T  33440042 attttccaccttttcacacataatgtgtgtgaatctaaccactagacta 33440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 14368467 - 14368410
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  14368467 gaaccacggattccccacttctccacacataatgtgtgtgaatctagccactaaacta 14368410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 37123628 - 37123671
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  37123628 cacttctccacacataatgtgtgtgaatctagccactagactac 37123671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 34319885 - 34319803
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||| |||||||  ||||  |||||   |||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  34319885 tgtgcaggggccaggattctaaccctggattcctcacttctctacacataatgtgtgtgaatctagccactagactacttgac 34319803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 20156979 - 20157024
Alignment:
Q  56 ttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  20156979 ttctccacacataatgtgtgtgaatctagacactaaactacttgac 20157024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 44287829 - 44287897
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagcca 87  Q
    ||||||| |||  ||||| ||||  ||||||  ||||||||||||||||||||||||||||||||||||    
T  44287829 tgtgcagaggttgggattcgaactccggattccccacttctccacacataatgtgtgtgaatctagcca 44287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 34028164 - 34028209
Alignment:
Q  56 ttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||    
T  34028164 ttctccacacataatgtgtgtgaatctaaccattaaactacttgac 34028209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 31068947 - 31068887
Alignment:
Q  35 tttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    |||||||  ||||||  |||||||||||||| ||||||||||||||||| |||||| ||||    
T  31068947 tttgaactccggattccccacttctccacacttaatgtgtgtgaatctaaccactagacta 31068887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 8915635 - 8915673
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  8915635 ccacttctccataaataatgtgtgtgaatctagccacta 8915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 38690834 - 38690796
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  38690834 ccacttctccacatataatgtatgtgaatctagccacta 38690796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 9198980 - 9198943
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtg 75  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  9198980 gaacctcgaatttcccacttctccacacataatgtgtg 9198943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 9932065 - 9932020
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatcta 83  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||||||    
T  9932065 gaaccccggattccccacttctccacatataatgtgtgtgaatcta 9932020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 32087370 - 32087341
Alignment:
Q  62 acacataatgtgtgtgaatctagccactaa 91  Q
    ||||||||||||||||||||||||||||||    
T  32087370 acacataatgtgtgtgaatctagccactaa 32087341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 9294159 - 9294131
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaat 80  Q
    |||||||||||||||||||||||||||||    
T  9294159 ccacttctccacacataatgtgtgtgaat 9294131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 47684557 - 47684475
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||  || |||||||| ||||||| | ||||||||| |||||||||||||||||||||||| || ||||| ||||    
T  47684557 tgtgcaggggttggggtttgaaccccggatttcctacttctccatacataatgtgtgtgaatctagccaatagactacttgac 47684475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 7683451 - 7683493
Alignment:
Q  54 acttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  7683451 acttctccacacataatgtgtgtgaatctaaccactaaactac 7683493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 27227301 - 27227252
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  27227301 ccacttctccacacataatgtgtttgaatctagccactagactacttgac 27227252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 27744635 - 27744692
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    |||| |||||||  ||||||||||||||||||||||||||||| || |||||||||||    
T  27744635 gaacatcggattccccacttctccacacataatgtgtgtgaatttaaccactaaacta 27744692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 32958527 - 32958604
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    |||||||| |||||  || ||||| |||||| ||||||| ||||||| ||||||||||||||||||||| || |||||    
T  32958527 tgtgcaggagtcagagttcgaaccccggattctccacttatccacacttaatgtgtgtgaatctagccattacactac 32958604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 25091232 - 25091280
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  25091232 cacttcttcacacataatgtgtgtgaatctagccactagactacttgac 25091280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 13054632 - 13054699
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagc 85  Q
    ||||||||||| | || || ||||| | ||||| |||||||||||||||||||||||| |||||||||    
T  13054632 atgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtgcgaatctagc 13054699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 9667273 - 9667219
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||| ||||||||||| |||||||||||||||||| |||||||| ||||| ||||    
T  9667273 atttcccacttctccatacataatgtgtgtgaatccagccactagactacttgac 9667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 23198562 - 23198524
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  23198562 ccacttctccacacataatgtgtgtaaatctagccacta 23198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 24250190 - 24250145
Alignment:
Q  45 ggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||    
T  24250190 ggattctccacttttccacacataatgtgtgtgaatctagtcacta 24250145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 40097949 - 40097904
Alignment:
Q  56 ttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  40097949 ttctccacacataatgtgtgtgaatttagacactaaactacttgac 40097904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 44165923 - 44165875
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  44165923 ccacttctccacacataatgtgtgtgaatct-gccactaacctacttgac 44165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 45725193 - 45725122
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||| ||||| ||| |||| |||   |||||||| ||||||||||| ||| |||||||||||||    
T  45725193 tgtgcaggggtcgggattcgaatctcgaattactcacttctctacacataatgtatgtaaatctagccacta 45725122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 23982078 - 23982124
Alignment:
Q  44 cggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||| |||| |||||  ||||||||||||||||||||||||||||    
T  23982078 cggattctccatttctctgcacataatgtgtgtgaatctagccacta 23982124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 29551166 - 29551212
Alignment:
Q  49 tttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    |||||||||||||| |||||||||||| ||||||||| |||| ||||    
T  29551166 tttccacttctccatacataatgtgtgcgaatctagctactagacta 29551212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 37307730 - 37307768
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  37307730 ccacttctccacaaataatgtgtttgaatctagccacta 37307768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 4225770 - 4225737
Alignment:
Q  170 aaaataatagttttagtagttttatttgggctaa 203  Q
    |||||||||||||||||||||||||||| |||||    
T  4225770 aaaataatagttttagtagttttatttgagctaa 4225737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 30745999 - 30745962
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  30745999 cacttctccacacataatgtgcgtgagtctagccacta 30745962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 41780531 - 41780568
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  41780531 cacttctacacacataatgtgtgtgaatctaaccacta 41780568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 45967389 - 45967360
Alignment:
Q  61 cacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||||||||||||||||||||    
T  45967389 cacacataatgtgtgtgaatctagccacta 45967360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 39584288 - 39584252
Alignment:
Q  55 cttctccacacataatgtgtgtgaatctagccactaa 91  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  39584288 cttctccacacataatatgtgtgagtctagccactaa 39584252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 20706543 - 20706612
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccac 88  Q
    ||||||| ||||| | |||||||||  |||||||||||||||||||| ||||||||||||||||| ||||    
T  20706543 tgtgcagaggtcaaggtttgaaccttagattttccacttctccacacgtaatgtgtgtgaatctaaccac 20706612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 30327726 - 30327770
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  30327726 ccacttctccacacataatatgtgtgaatctagccactaaactac 30327770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 43406055 - 43405998
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||||| |||| |||||||||||||||||||||||||||| |||| |||||| ||||    
T  43406055 gaacctcagattctccacttctccacacataatgtgtgtgagtctaaccactagacta 43405998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 5002052 - 5002005
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctga 100  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  5002052 cacttctccatacacaatgtgtgtgaatttagccactaaactacctga 5002005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 8032897 - 8032968
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||  ||||| ||||| |  ||| ||||| |||||||||||||||||||||||| |||||||||    
T  8032897 tgtgcaggggttgggattcgaaccccaaattctccacatctccacacataatgtgtgtgaatttagccacta 8032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 24793512 - 24793594
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||| || |  ||||| | ||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  24793512 tgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgac 24793594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 31478739 - 31478693
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctag 84  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||||    
T  31478739 gaacttcggattctccacttctctacacataatgtgtgtgaatctag 31478693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 5476234 - 5476292
Alignment:
Q  170 aaaataatagttttagtagttttatttgggctaactagttttattcgaccaagttcatttgta 232  Q
    ||||||||||||||||||||||||||||    ||||||||||||| || || |||||||||||    
T  5476234 aaaataatagttttagtagttttatttg----aactagttttattagatcatgttcatttgta 5476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 32398287 - 32398336
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||| ||||||||||| | ||| ||||||||||    
T  32398287 ccacttctccacacataatgtatgtgaatctagtcgctatactacctgac 32398336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 28282407 - 28282455
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||||||||| |||||||||||| |||||| ||||| ||||    
T  28282407 cacttctccacacataatatgtgtgaatctaaccactagactacttgac 28282455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 15409223 - 15409272
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||| ||||    
T  15409223 ccacttctttacacataatgtgtgtgaatttagccactagactacttgac 15409272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 39968978 - 39969019
Alignment:
Q  45 ggattttccacttctccacacataatgtgtgtgaatctagcc 86  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  39968978 ggatttcccacttctccacacataatgtgtgcgaatttagcc 39969019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 10524881 - 10524929
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    |||||||| |||| |||||||||| |||||||||||| || ||||||||    
T  10524881 attttccaattcttcacacataatatgtgtgaatctaaccgctaaacta 10524929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31351743 - 31351666
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    |||||||||||| || || ||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||    
T  31351743 tgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtgaatctagccactagactac 31351666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 35010453 - 35010382
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||| ||| || || ||||  ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  35010453 tgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgtgtatgaatctagccacta 35010382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 9460236 - 9460282
Alignment:
Q  56 ttctccacacataatgtgtgtgaatctagccactaaactacctgacc 102  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  9460236 ttctccacacataatgtgtgtgaatatagccactaaactacttgacc 9460282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 13538297 - 13538243
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  13538297 atttcccacttctccatacataatgtgtgtgaatctagccactagactacttgac 13538243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 35130681 - 35130612
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccac 88  Q
    |||||||||| | || || ||||| ||||||| |||||||| ||||||| ||||||||||||||||||||    
T  35130681 tgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaatctagccac 35130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 54733309 - 54733272
Alignment:
Q  57 tctccacacataatgtgtgtgaatctagccactaaact 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54733309 tctccacacataatgtgtgtgaatctagccactaaact 54733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 39721530 - 39721599
Alignment:
Q  182 ttagtagttttatttgggctaactagttttattcgaccaagttcatttgtaaccctaacaatcgttaattggaa 255  Q
    |||||||||||||||||||||     ||||||| |  ||||||||||||||||||||||||| |||||||||||    
T  39721530 ttagtagttttatttgggctat----ttttattagttcaagttcatttgtaaccctaacaattgttaattggaa 39721599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 38415565 - 38415494
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||| |||||||||| ||||| |  ||| |||| |||| || |||||||||||||||||||||||||||    
T  38415565 tgtgcagaggtcaggattcgaaccccaaattctccatttcttcatacataatgtgtgtgaatctagccacta 38415494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 49479529 - 49479576
Alignment:
Q  54 acttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  49479529 acttctccacacataatgtgtgtgaatctaaccactagactacttgac 49479576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 17882313 - 17882233
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||| |||| || ||||| |||||| || ||||||||| ||||||||||||| ||||||||||||| ||||| ||||    
T  17882313 tgtgcagggg-cagggttcgaaccccggattctctacttctcca-acataatgtgtgtaaatctagccactagactacttgac 17882233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 42721543 - 42721498
Alignment:
Q  47 attttccacttctccacacata--atgtgtgtgaatctagccacta 90  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  42721543 attttccacttctccacacatataatgtgtgtgaatctagccacta 42721498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 50264027 - 50263989
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  50264027 ccacttctccacacatgatgtgtgtgaatctagccacta 50263989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 28091366 - 28091333
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagc 85  Q
    ||||||||||||||||||||||||||||||||||    
T  28091366 ccacttctccacacataatgtgtgtgaatctagc 28091333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 42657572 - 42657617
Alignment:
Q  51 tccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||    
T  42657572 tccacttcttcacacataatgtgtgtgaatttaaccactaaactac 42657617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 1940039 - 1939999
Alignment:
Q  45 ggattttccacttctccacacataatgtgtgtgaatctagc 85  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  1940039 ggattttccacttctccatacataaagtgtgtgaatctagc 1939999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 7921656 - 7921704
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||| ||||    
T  7921656 cacttctccacacatcatgtgtgtgaatttagccactagactacttgac 7921704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 40981840 - 40981785
Alignment:
Q  35 tttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||| ||| |||| ||||||||||||||||||||||| || |||||| ||||||    
T  40981840 tttgaatctcagattctccacttctccacacataatgtgcgtaaatctaaccacta 40981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 45333491 - 45333451
Alignment:
Q  52 ccacttctccacacata--atgtgtgtgaatctagccacta 90  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  45333491 ccacttctccacacatataatgtgtgtgaatctagccacta 45333451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 45341181 - 45341141
Alignment:
Q  52 ccacttctccacacata--atgtgtgtgaatctagccacta 90  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  45341181 ccacttctccacacatataatgtgtgtgaatctagccacta 45341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 3746438 - 3746390
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagcc 86  Q
    ||||| ||||||| ||| ||||||||| ||||||||||| |||||||||    
T  3746438 gaaccccggatttcccatttctccacatataatgtgtgtaaatctagcc 3746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 25273139 - 25273056
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgacc 102  Q
    |||||||||||| ||| || |||| |||||||  ||||||||||| | ||||| |||| ||||||| |||||| |||| ||||||    
T  25273139 atgtgcaggggttagggttcgaac-tcggattccccacttctccatatataatatgtgcgaatctaaccactagactatctgacc 25273056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 38438407 - 38438367
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagcca 87  Q
    |||| ||||||||||| ||||||||||| ||||||||||||    
T  38438407 atttcccacttctccaaacataatgtgtatgaatctagcca 38438367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 2098802 - 2098854
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  2098802 gaaccccggattctccacttctccacatataatgtgtgtgaatctagccacta 2098854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 2661669 - 2661631
Alignment:
Q  53 cacttctccacacataatgtgtgtgaatctagccactaa 91  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2661669 cacttctccacacataatatgtgtgaatctagccactaa 2661631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 1927612 - 1927657
Alignment:
Q  56 ttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  1927612 ttctccacacataatgtgtgtgaatctagtcaccaaactacttgac 1927657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 8757345 - 8757273
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||| | || || |||||  |||||  |||| ||||||||||||||||||||||||||| ||||||    
T  8757345 atgtgcaggggccggggttcgaaccctggattccccacgtctccacacataatgtgtgtgaatctaaccacta 8757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 35997048 - 35997088
Alignment:
Q  51 tccacttctccacacataatgtgtgtgaatctagccactaa 91  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  35997048 tccacttcttcacacataatgtgtgtgactctagccactaa 35997088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 13350821 - 13350865
Alignment:
Q  47 attttccacttctccacacataatgtgtgtgaatctagccactaa 91  Q
    |||||||||||||||||||||||| | ||||||| ||| ||||||    
T  13350821 attttccacttctccacacataatatttgtgaatatagtcactaa 13350865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 8176965 - 8177020
Alignment:
Q  35 tttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||    
T  8176965 tttgaacctcgaattctccacttctccacacataatgtgtatgaatttagccacta 8177020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 12654540 - 12654485
Alignment:
Q  46 gattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||    
T  12654540 gattttccactttttcacacataatgtgtgtgaatctagccaataaactacttgac 12654485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 21023742 - 21023680
Alignment:
Q  33 gatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||| | ||||| ||||    
T  21023742 gattcgaaccccggattctccacttctccacacataatgtgtgtgaatcttgtcactagacta 21023680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 7339536 - 7339604
Alignment:
Q  21 tgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||||||| ||||||||| |  ||| | ||||||| ||||||||||||||||||||||||||||||    
T  7339536 tgcaggggtcagaatttgaacccca-attcttcacttcttcacacataatgtgtgtgaatctagccacta 7339604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 7326368 - 7326324
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaactac 96  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  7326368 ccacttctccacacataatgtgtgtgaatttagccactagactac 7326324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 5925652 - 5925690
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  5925652 ccacttcttcacacataatgtgtgtgaatctagccacta 5925690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 6922671 - 6922633
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccacta 90  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  6922671 ccacttctccacatataatgtgtgtgaatctagccacta 6922633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 12606721 - 12606763
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaaact 94  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  12606721 ccacttcttcacatataatgtgtgtgaatctagccactaaact 12606763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 24896906 - 24896867
Alignment:
Q  52 ccacttctccacacataatgtgtgtgaatctagccactaa 91  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  24896906 ccacttcaccacacataatgtgtgtgaatttagccactaa 24896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 20599463 - 20599382
Alignment:
Q  18 atgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgacc 102  Q
    ||||||| ||||| || |||||||| ||||||  ||||||||||||||||||   |||||| |||| |||||| |||| ||||||    
T  20599463 atgtgcaagggtcggggtttgaaccccggattccccacttctccacacataa---gtgtgagtctaaccactagactatctgacc 20599382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 9753 - 9703
Alignment:
Q  39 aacctcggattttccacttctccacacataatgtgtgtgaatctagccact 89  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  9753 aaccccggattccccacttctccacacataatgtgtgtgaatctagccact 9703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 35895 - 35977
Alignment:
Q  19 tgtgcaggggtcaggatttgaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaactacctgac 101  Q
    |||||||||||| || |  ||||| | ||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  35895 tgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccactagactacttgac 35977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 58696 - 58639
Alignment:
Q  38 gaacctcggattttccacttctccacacataatgtgtgtgaatctagccactaaacta 95  Q
    ||||| ||||||| |||||||||||||||| || ||||||| ||||||||||| ||||    
T  58696 gaaccccggatttcccacttctccacacattatatgtgtgattctagccactagacta 58639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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