View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11898_low_14 (Length: 277)

Name: NF11898_low_14
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11898_low_14
NF11898_low_14
[»] chr3 (2 HSPs)
chr3 (1-267)||(38939066-38939332)
chr3 (2-267)||(7052974-7053239)
[»] scaffold0256 (1 HSPs)
scaffold0256 (1-267)||(9332-9598)
[»] chr6 (11 HSPs)
chr6 (1-267)||(16781287-16781553)
chr6 (2-141)||(16788273-16788412)
chr6 (2-267)||(17069688-17069953)
chr6 (2-142)||(16987761-16987901)
chr6 (2-163)||(16837964-16838125)
chr6 (2-267)||(18805904-18806169)
chr6 (2-142)||(16797473-16797613)
chr6 (2-141)||(16844141-16844280)
chr6 (2-267)||(18872898-18873163)
chr6 (2-132)||(16658326-16658456)
chr6 (2-267)||(16867719-16867982)
[»] chr8 (1 HSPs)
chr8 (3-267)||(13378279-13378543)
[»] scaffold0133 (3 HSPs)
scaffold0133 (2-267)||(13031-13296)
scaffold0133 (206-263)||(26956-27013)
scaffold0133 (2-120)||(8836-8954)
[»] scaffold0144 (1 HSPs)
scaffold0144 (2-163)||(37773-37934)
[»] chr5 (5 HSPs)
chr5 (8-73)||(17983907-17983972)
chr5 (17-75)||(30476382-30476440)
chr5 (8-69)||(30207535-30207596)
chr5 (5-69)||(30484414-30484478)
chr5 (5-69)||(30712457-30712521)
[»] scaffold0230 (1 HSPs)
scaffold0230 (2-267)||(4861-5126)
[»] scaffold0511 (1 HSPs)
scaffold0511 (2-267)||(9541-9806)
[»] chr1 (1 HSPs)
chr1 (8-73)||(7580751-7580816)
[»] chr7 (1 HSPs)
chr7 (5-73)||(26708341-26708409)
[»] chr4 (1 HSPs)
chr4 (5-69)||(20295611-20295675)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 38939066 - 38939332
Alignment:
Q  1 tctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  38939066 tctctctgtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaacaatgaaagcgtaaccacccattttgatttg 38939165  T
Q  101 aaaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38939166 aaaatatgggtttgtgtttcagatgatttcagcatgatgaaaatcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgg 38939265  T
Q  201 aattaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38939266 aatcaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaggtatttacttgtactggatgatgt 38939332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 7052974 - 7053239
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||| ||||| |||||||||| |   ||||||||||||||||||||||||||||||||||||| |||||| ||||  ||| |||||||||||| ||||    
T  7052974 ctctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttga 7053073  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |||   || | ||    
T  7053074 aaatatgggtttgtgtttcagatgatttcagcatgattaaaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctaga 7053173  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    ||  |||||||| || ||||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  7053174 atccatgcaaaaaaaggttcaagaagttttgcaaagcaaaaggtatttacttgtattagatgatgt 7053239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 9598 - 9332
Alignment:
Q  1 tctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||    
T  9598 tctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacgaagaaagcgtaaccacccattttgatttg 9499  T
Q  101 aaaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9498 aaaatatgggtttgtgtttcagatgatttcagcatgatgaaaatcctacactccatcatagaatctgccactggacaaagtcataatttcttgactttgg 9399  T
Q  201 aattaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    |||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9398 aatcgatgcaaaaaaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactcgatgatgt 9332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 16781553 - 16781287
Alignment:
Q  1 tctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||    
T  16781553 tctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtatacaaggatgaaagcgtaaccacccattttgatttg 16781454  T
Q  101 aaaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgg 200  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |    
T  16781453 aaaatatgggtttgtgtttcagatgatttcagcatcatgaaaatcctacactctatcatagaatctgccactggacaaaatcataatctctcgactttag 16781354  T
Q  201 aattaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16781353 aattaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 16781287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 16788412 - 16788273
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||| || ||||  |||  | |||||||||  |||    
T  16788412 ctctctgtctattccattgttggcctaggtgaatatggaaaaacaacacttgctcaattagtatacaacaatgaaagagtaagaaaccattttgacctga 16788313  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaa 141  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  16788312 aaatatggatttttgtttcagatgatttcagcatgatgaa 16788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 17069953 - 17069688
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | || ||| | |||||||||||||| |||||| |||||||||| ||| ||||  |||  || |||||||| ||||    
T  17069953 ctctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttga 17069854  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| |||||||||||  |||||||| |  || | ||||||||||||    ||| |||| ||||||   || ||||| |||| ||    
T  17069853 aaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaatctagatctcttgtctttaga 17069754  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
     | || |||||| || ||||||||| ||||||||||||||| |||||| ||||| || ||||||||    
T  17069753 gtcaaggcaaaaaaaggttcaagaaattttgcaaagcaaaaggtatttgcttgttcttgatgatgt 17069688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 16987901 - 16987761
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    ||||||||||||||||||||||| |  |||||||||||||||||| ||||||||||| |||||| ||| ||| ||||  |||  || |||||||| ||||    
T  16987901 ctctctgtctattccattgttggccacggtggatatggaaaaacagcacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttga 16987802  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaa 142  Q
    |||||||||| | |||||| ||||||||||| |||||||||    
T  16987801 aaatatgggtgtgtgtttctgatgatttcagtatgatgaaa 16987761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 16838125 - 16837964
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | || ||| | |||||||||||||| |||||| |||||||||| ||| ||||  |||  || |||||||| ||||    
T  16838125 ctctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttga 16838026  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaa 163  Q
    |||||||||| | |||||| |||||||||||  |||||||| |  || | ||||||||||||    
T  16838025 aaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaa 16837964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 18805904 - 18806169
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | |||||  | ||||||||||||||||||||| |||| | ||| ||| ||||  ||   || || ||| | ||||    
T  18805904 ctctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtattcaatgatgaaagggtagatacacactttaacttga 18806003  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| || ||||| || ||||||||| |  | || |||||||||||||| |||  |||| ||| ||   || ||| | |||| ||    
T  18806004 aaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccgccgttggaaaaagtccagatctctcgtctttaga 18806103  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    || |||||||||| |||||||| || ||||||||| ||||| |||| ||||||| || ||||||||    
T  18806104 atcaatgcaaaaggaagttcaaaaaattttgcaaaacaaaaggtatctacttgttcttgatgatgt 18806169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 16797613 - 16797473
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | || ||| | |||||||||||||| |||||| |||||||||| ||| ||||  |||  || |||||||| ||||    
T  16797613 ctctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttga 16797514  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaa 142  Q
    |||||||||| | |||||| |||||||||||  ||||||||    
T  16797513 aaatatgggtgtgtgtttcggatgatttcagtttgatgaaa 16797473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 16844280 - 16844141
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    ||||||||||||||||||||||| |  |||||||||||||| ||| ||||||||||| |||||| ||| ||| | ||  |||  || ||||||  |||||    
T  16844280 ctctctgtctattccattgttggtcatggtggatatggaaagacagcacttgctcaactggtcttcaatgatgagagggtaaatactcattttcctttga 16844181  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaa 141  Q
    |||||||||||| |||||| |||||||| || ||||||||    
T  16844180 aaatatgggtttgtgtttctgatgattttagtatgatgaa 16844141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 18872898 - 18873163
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | |||||  | ||||||||||||||||||||| |||||| ||| ||| ||||  ||   || || ||| | ||||    
T  18872898 ctctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtcttcaatgatgaaagggtagatacacactttaacttga 18872997  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| || ||||| || ||||||||| |  | || ||||||||||||||  ||  |||| ||||||   || ||| | |||| ||    
T  18872998 aaatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttaga 18873097  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    || |||||||||||| ||| || |  ||||||||| ||||| |||| ||||||| || ||||||||    
T  18873098 atcaatgcaaaagaaggttaaaaatattttgcaaaacaaaaggtatctacttgttcttgatgatgt 18873163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 16658456 - 16658326
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||| ||||||||||||  | || ||| | |||||||||||||| |||||| |||||| ||| ||| ||||  |||  || |||||||| ||||    
T  16658456 ctctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtcttcaatgatgaaagggtaaaaacacattttgacttga 16658357  T
Q  102 aaatatgggtttctgtttcagatgatttcag 132  Q
    |||||||||| | |||||| |||||||||||    
T  16658356 aaatatgggtgtgtgtttcggatgatttcag 16658326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 16867719 - 16867982
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||| ||||||||||||  | || ||| | |||||||||||||| |||||| |||||| ||| ||| ||||  |||  || |||||||| ||||    
T  16867719 ctctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtcttcaatgatgaaagggtaaaaacacattttgacttga 16867818  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||  | |||||| || ||||||||  |||||||| |  || | ||||||| ||||    ||| |||| ||||||   || ||||| |||| ||    
T  16867819 aaatatggg--tgtgtttcggacgatttcagtttgatgaaaattttagagtccatcacagaaaacaccattggaaaaaatctagatctcttgtctttaga 16867916  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    |    ||  ||| || ||||||||| ||||||||| |||||||||||| ||||| || ||||||||    
T  16867917 aaccttgagaaaaaaggttcaagaaattttgcaaaacaaaaagtatttgcttgttcttgatgatgt 16867982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 13378543 - 13378279
Alignment:
Q  3 tctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttgaa 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||| |||||| ||||| |||||    
T  13378543 tctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatgaaaacgtaagcacccactttgacttgaa 13378444  T
Q  103 aatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttggaa 202  Q
    ||||||||||| |||||| ||||||||||| |||| |||| ||||||| || |||||||||||||  || |||| |||||  ||| || || ||||||||    
T  13378443 aatatgggtttgtgtttctgatgatttcagtatgaagaaaatcctacattctatcatagaatctgaaacaggacgaaatccgaatctcatgtctttggaa 13378344  T
Q  203 ttaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  13378343 tcaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaggtatttacttgtactagatgatgt 13378279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 13296 - 13031
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||| |||||| ||| ||| ||||  |||  || |||||||| ||||    
T  13296 ctctctgtctattccattgttggccacggtggatatggaaaaacaacacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttga 13197  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| ||||||||||| ||||||||  |  || | ||||||||||||    ||| |||| ||||||  ||| |||   |||| ||    
T  13196 aaatatgggtgtgtgtttctgatgatttcagtatgatgaaggttttagagtccatcatagaagacaccattggaaaaaatccaaatctctcctctttaga 13097  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
     | ||||| ||| || ||||||||| ||||||||| ||||| |||||| ||||| || ||||||||    
T  13096 gtcaatgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt 13031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 27013 - 26956
Alignment:
Q  206 atgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatg 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27013 atgcaaaaaaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatg 26956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 8954 - 8836
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||||   |||| ||| ||| ||||  |||  || |||||||| ||||    
T  8954 ctctctgtctattctattgttggccacggtggatatggaaaaacaacacttgctcaaacagtcttcaatgatgaaagggtaaagacacattttgacttga 8855  T
Q  102 aaatatgggtttctgtttc 120  Q
    |||||||||| | ||||||    
T  8854 aaatatgggtgtgtgtttc 8836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 37934 - 37773
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||| ||||| ||||||||||||  | || ||| | |||||||||||||| |||||| |||||||||| ||| ||||  |||  || |||||||| ||||    
T  37934 ctctttgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttga 37835  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaa 163  Q
    |||||||||| | |||||| |||||||||||  |||||||| |  || | ||||||||||||    
T  37834 aaatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaa 37773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 17983972 - 17983907
Alignment:
Q  8 gtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgat 73  Q
    |||||| ||||||||||| |||||||   |||||||||||| ||||||||||||||||||||||||    
T  17983972 gtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgat 17983907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 30476440 - 30476382
Alignment:
Q  17 attgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatca 75  Q
    |||||||| ||||||||   ||| |||||||||||||||||| |||||||||| |||||    
T  30476440 attgttggcctaggtggtgttggtaaaacaacacttgctcaaatggtctacaatgatca 30476382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 30207596 - 30207535
Alignment:
Q  8 gtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaa 69  Q
    |||||| ||||||||||  |||||||   |||||||||||| |||| |||||||||||||||    
T  30207596 gtctatcccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaa 30207535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 30484478 - 30484414
Alignment:
Q  5 tctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaa 69  Q
    ||||||||| ||||||||||  |||||||   |||||||||||| |||| ||||||| |||||||    
T  30484478 tctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaa 30484414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 30712457 - 30712521
Alignment:
Q  5 tctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaa 69  Q
    ||||||||| ||||||||||  |||||||   |||||||||||| |||| ||||||| |||||||    
T  30712457 tctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaa 30712521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 5126 - 4861
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    |||||||||||||||||||||||  | |||||  | ||||||||||||||||||||| |||| | ||| ||  ||||  ||   || || ||| | ||||    
T  5126 ctctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgaggaaagggtagatacacactttaacttga 5027  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| || ||||| |  ||||||||| |  | || ||||||||||||||  ||  |||| ||||||   || ||| | |||| ||    
T  5026 aaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttaga 4927  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    || |||||||||||| ||| || |  ||||||||| |||||  ||| ||||||| || ||||||||    
T  4926 atcaatgcaaaagaaggttaaaaatattttgcaaaacaaaagatatctacttgttcttgatgatgt 4861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 9806 - 9541
Alignment:
Q  2 ctctctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgatcaaagcataaccacccattttgatttga 101  Q
    ||||| |||||||||||||||||  | |||||  | ||||||||||||||||||||| |||| | ||| ||| ||||  ||   || || ||| | ||||    
T  9806 ctctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgatgaaagggtagatacacactttaacttga 9707  T
Q  102 aaatatgggtttctgtttcagatgatttcagcatgatgaaactcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttgga 201  Q
    |||||||||| | |||||| || ||||| |  ||||||||| |  | || ||||||||||||||  ||  |||| ||||||   || ||| | |||| ||    
T  9706 aaatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttaga 9607  T
Q  202 attaatgcaaaagaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt 267  Q
    || |||||||||||| ||| || |  |||||||||  ||||  ||| ||||||| || ||||||||    
T  9606 atcaatgcaaaagaaggttaaaaatattttgcaaaataaaagatatctacttgttcttgatgatgt 9541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 7580751 - 7580816
Alignment:
Q  8 gtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgat 73  Q
    |||||| | ||||||||  |||||||   |||||||||||| ||||||||||||||||||||||||    
T  7580751 gtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgat 7580816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 26708409 - 26708341
Alignment:
Q  5 tctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaacgat 73  Q
    ||||||||| ||||||||||  |||||||   |||||||||||| |||| ||| ||| |||||||||||    
T  26708409 tctgtctatcccattgttggcttaggtggtattggaaaaacaactcttgttcagttgatctacaacgat 26708341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 20295611 - 20295675
Alignment:
Q  5 tctgtctattccattgttgggctaggtggatatggaaaaacaacacttgctcaattggtctacaa 69  Q
    ||||||||| ||||||||||  |||||||   |||||||||||| |||| |||||| ||||||||    
T  20295611 tctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattagtctacaa 20295675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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