View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_16 (Length: 258)
Name: NF11898_low_16
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 35882074 - 35881851
Alignment:
| Q |
17 |
gtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggtt |
116 |
Q |
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| T |
35882074 |
gtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggtt |
35881975 |
T |
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| Q |
117 |
ttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccgaatttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaa |
216 |
Q |
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| T |
35881974 |
ttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccgaatttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaa |
35881875 |
T |
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| Q |
217 |
aaccagcttggtacatggccttgt |
240 |
Q |
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| T |
35881874 |
aaccagcttggtacatggccttgt |
35881851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 24456275 - 24456052
Alignment:
| Q |
17 |
gtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456275 |
gtgctcttaagttgttgtgagaaaggtcgaggattttaaggttttggaagctagagagttgagcaacgttggtgaacctgttgtgtgagagattaaggtt |
24456176 |
T |
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| Q |
117 |
ttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccgaatttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456175 |
ttgaatggttgaggttttattgttcaactcaatggtgatgcttcctccgaatttgtttcttgagaggtttatttctaataaggatgaaaaactagaccaa |
24456076 |
T |
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| Q |
217 |
aaccagcttggtacatggccttgt |
240 |
Q |
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| T |
24456075 |
aaccagcttggtacatggccttgt |
24456052 |
T |
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Back To:
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