View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_17 (Length: 252)
Name: NF11898_low_17
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 12108768 - 12108962
Alignment:
| Q |
22 |
tgagggataatatagaaataacagaacagaagaaaaattccaaaaatgcatctgattcaaataattccaagatacaccaaaaacacttcaatagcaaggt |
121 |
Q |
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| T |
12108768 |
tgagggataatatagaaataatagaacagaagaaaaattccaaaaatgcatctgatgcaaataattccaagatacaccaaaaacacttcaatagcaagga |
12108867 |
T |
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| Q |
122 |
attgttgtggattttcttcctaaaaataaagtttcatgtggacagtagttgacaactagctcactcatagttcaattgaatgtgcatatatcagtgtatc |
221 |
Q |
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| T |
12108868 |
attgttgtggattttcttcctaaaaataaagt--------------------aaactagctcactcatggctcaattgaatgtgcatatatcagtgtatc |
12108947 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 9659622 - 9659718
Alignment:
| Q |
144 |
aaaataaagtttcatgtggacagtagttgacaactagctcactcatagttcaattgaatgtgcatatatcagtgtatcacacaatacatatacgcac |
240 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9659622 |
aaaataaagtttcatggggacagtagttgacaactagctcactcatagctcaattgaatgtgcatatatcagtgtatcacacaatacatatacgcac |
9659718 |
T |
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