View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_3 (Length: 629)
Name: NF11898_low_3
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 6 - 615
Target Start/End: Complemental strand, 49521537 - 49520928
Alignment:
| Q |
6 |
gatggacatcatgttgaatcatcggagctgctaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctt |
105 |
Q |
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||||| |||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521537 |
gatggccatcatgttgaagcatcgcagaagcgaacagttatcagtttcataggcggtattgatctttgcgatggaagatatgatacaatggaacatcctt |
49521438 |
T |
|
| Q |
106 |
tgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatga |
205 |
Q |
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| T |
49521437 |
tgttttcaacattgaatacaatccatcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatga |
49521338 |
T |
|
| Q |
206 |
tattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaatt |
305 |
Q |
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| T |
49521337 |
tattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagcaagttgggaagcaattcctattcccaatt |
49521238 |
T |
|
| Q |
306 |
gaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtg |
405 |
Q |
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| T |
49521237 |
gaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagtgttcagttgtttagatccattgatggtg |
49521138 |
T |
|
| Q |
406 |
gagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagacaacatcattgatagaagcattcaagatgccta |
505 |
Q |
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| T |
49521137 |
gtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagacaacatcattgatagaagcattcaagatgccta |
49521038 |
T |
|
| Q |
506 |
tataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatggttggcattcaactgatattaaagttgag |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521037 |
tataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatggttggcattcaactgatattaaagttgag |
49520938 |
T |
|
| Q |
606 |
gatattggtg |
615 |
Q |
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|||||||||| |
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| T |
49520937 |
gatattggtg |
49520928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 372 - 615
Target Start/End: Complemental strand, 49510025 - 49509782
Alignment:
| Q |
372 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
471 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
|
| Q |
472 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
571 |
Q |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
49509826 |
T |
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| Q |
572 |
ctatggttggcattcaactgatattaaagttgaggatattggtg |
615 |
Q |
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| T |
49509825 |
atatggttggaaatcgtctgatattaaagttgaggatattggtg |
49509782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 160 - 292
Target Start/End: Complemental strand, 49510240 - 49510108
Alignment:
| Q |
160 |
caggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttga |
259 |
Q |
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| T |
49510240 |
caggtgcttctattaataaaggtggtcctagagagccatggcatgatattcattgtaaactagaaggacctgttgcttgggatgtgttgtgcaattttga |
49510141 |
T |
|
| Q |
260 |
gcagaggtgggaaaagcaagttgggaagcaatt |
292 |
Q |
| |
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||| || ||||||||||||||||| || ||||| |
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| T |
49510140 |
gcaaagatgggaaaagcaagttggaaaacaatt |
49510108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 49510533 - 49510428
Alignment:
| Q |
60 |
ggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcgacattgaatacaatccatcatgatgattttcatcaaccaaatttcc |
159 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49510533 |
ggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcatcaaccaaatttcc |
49510434 |
T |
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| Q |
160 |
caggtg |
165 |
Q |
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|||||| |
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| T |
49510433 |
caggtg |
49510428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 44662302 - 44662438
Alignment:
| Q |
129 |
catcatgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggac |
228 |
Q |
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|||||||||||||||||||| || || || || |||||||| || | |||||||||||||| ||||| ||||||||||| |||| | ||| ||||| | |
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| T |
44662302 |
catcatgatgattttcatcagcctaactttcctggtgcttcaatagaaaaaggtggtcctagggaaccttggcatgatatccactcaaggcttgaaggtc |
44662401 |
T |
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| Q |
229 |
ctattgcatgggatgtgttgtacaattttgagcagag |
265 |
Q |
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| T |
44662402 |
ccattgcttgggatgttttgtttaactttgagcagag |
44662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 576
Target Start/End: Original strand, 44662644 - 44662746
Alignment:
| Q |
474 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
573 |
Q |
| |
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||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
|
| Q |
574 |
atg |
576 |
Q |
| |
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||| |
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| T |
44662744 |
atg |
44662746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
489 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
562 |
Q |
| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 2416753 - 2416636
Alignment:
| Q |
132 |
catgatgattttcatcaaccaaatttcccaggtgcttctattaagaaaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggaccta |
231 |
Q |
| |
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|||||||||||||||||||| || || ||||||||| | || | ||||| ||||| || ||||| |||||||| ||||| | | || |||||||| | |
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| T |
2416753 |
catgatgattttcatcaacctaactttccaggtgctgcaatcacaaaaggcggtccaagggaaccttggcatgacattcattcccgccttgaaggaccga |
2416654 |
T |
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| Q |
232 |
ttgcatgggatgtgttgt |
249 |
Q |
| |
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|||| ||||||||||||| |
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| T |
2416653 |
ttgcttgggatgtgttgt |
2416636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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