View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_4 (Length: 612)
Name: NF11898_low_4
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 13 - 596
Target Start/End: Original strand, 8133286 - 8133869
Alignment:
| Q |
13 |
accgccgtcgcaggcaacacgtggctatcggctactaacccttcaccatcaaacaccccattagctaaaatcataccaatcccaccagctttcttcacta |
112 |
Q |
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| T |
8133286 |
accgccgtcgcaggcaacacgtggctatcggctactaacccttcaccatcaaacaccccattagctaaaatcataccaatcccaccagctttcttcacta |
8133385 |
T |
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| Q |
113 |
cttcacctttatcacctcttgaattaatccctctatcacaaacaacaatttccccttttacaaacttaggatccaaagaacctgctaaacaaagtgaaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133386 |
cttcacctttatcacctcttgaattaatccctctatcacaaacaacaattttcccttttacaaacttaggatccaaagaacctgctaaacaaagtgaaga |
8133485 |
T |
|
| Q |
213 |
tgaataaccatcaccaccttctccaccaccgtgaccaccactgccggcatacacaaccgggtacattcgacccggagttaaactcggcccaccatatata |
312 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133486 |
tgaataaccatcaccaccttctccaccaccgtgttcaccactgccggcatacacaaccgggtacattcgacccggagttaaactcggcccaccatatata |
8133585 |
T |
|
| Q |
313 |
ctaactccagatacaatcttaccattcccaagcttcacatcagcaggaaaatctctatcaattgtcccagcaccgacagttgccacccacggagctacat |
412 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133586 |
ctaactccagatataatcttaccattcccaagcttcacatcagcaggaaaatctctatcaattgtcccagcaccgacagttgccacccacggagctacat |
8133685 |
T |
|
| Q |
413 |
tggtaacggtgagcccacctggcccaccgttaccagctgatgccgaaacaaaaactccggcatcagaagctccaaaagcacctatagcaataacgtcaag |
512 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133686 |
tggtaacggtgagctcacctggcccaccgttaccagctgatgcagaaacaaaaactccggcatcagaagctccaaaagcacctatagcaataacgtcaag |
8133785 |
T |
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| Q |
513 |
atggtacggaacaacaacaccaccgacactgagagaaaccacgtcaacaccgtcagccacggcggcgtcaaacgccgcaagtat |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133786 |
atggtacggaacaacaacaccaccgacactgagagaaaccacgtcaacaccgtcagccacggcggcgtcaaacgccgcaagtat |
8133869 |
T |
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