View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11898_low_9 (Length: 492)
Name: NF11898_low_9
Description: NF11898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11898_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 36 - 477
Target Start/End: Original strand, 17725214 - 17725658
Alignment:
| Q |
36 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacatt---ccctcaatatttttcaatgaattgcttgatgaacaacatcaattctt |
132 |
Q |
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| T |
17725214 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacattattcccttaatatttctcaatgaattgcttgatgaccaacatcaattctt |
17725313 |
T |
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| Q |
133 |
ttgatggttctgaatttggatcaagagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttcttac |
232 |
Q |
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| T |
17725314 |
ttgatggttctgaatttggatcaatagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttcttgc |
17725413 |
T |
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| Q |
233 |
ataatcatctgtcctatctttaagcaaatcattttctccaaccaccacaagaattgggtcaagatcaatttcctcaagactcttacttcttggtccaaat |
332 |
Q |
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| T |
17725414 |
ataatcctctgtcctatctttaagcaaatcattttctccaaccaccacaagaattgggtcaagatcaatttcctcaagactcttacttcttggtccaaat |
17725513 |
T |
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| Q |
333 |
ggattcacaagtgggtgatcagtatcttctccaatgggtatagaaagcctccaatacctgttcaatattaaggcataataacaaatcaatgttctattct |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725514 |
ggattcacaagtgggtgatcagtatcttctccaatgggtatagaaagcctccaatacctgttcaatattaaggcataataacaaatcaatgttctattct |
17725613 |
T |
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| Q |
433 |
atacacactataagtttgaaattaattttatattgtttacttcct |
477 |
Q |
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| T |
17725614 |
atacacactataagtttgacattaattttatattgtttacttcct |
17725658 |
T |
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