View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11899_low_1 (Length: 557)
Name: NF11899_low_1
Description: NF11899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11899_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 39502205 - 39502714
Alignment:
| Q |
17 |
cttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgattcgtatgctattcccttcgtttatgattgcaagatgctttgacattttt |
116 |
Q |
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| T |
39502205 |
cttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgatttgtatgctattcccttcgtttatgattacaagatgctttgacattttt |
39502304 |
T |
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| Q |
117 |
tatttgtattaagaaaaattggtagtataattaatatatataaattgcatatgaaaattggattttatggctgcatccacatccaaattaagctcgctct |
216 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39502305 |
tatttgtagtaagaaaaattggtagtgtaattaatatatataaattgcatatgaaaattggattttatggctgcatccacatccaaattaagctcgctct |
39502404 |
T |
|
| Q |
217 |
tggagctttatatcacaacacattcaagatctttattgaagttgtattggaatttcacattgatcatgtttccttggatgtataaatgtgtttaaacacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39502405 |
tggagctttatatcacaacacattcaagatctttattgaaattgtattggaatctcacattgatcatgtttccatggatgtataaatgtgtttaaacacc |
39502504 |
T |
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| Q |
317 |
gtcatttgagttaacttttaaaatgagattcaaatatatttaatatgatatcaaaatcgggtaaaggattttaatattaaaattagacttgtgcgtgact |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39502505 |
gtcatttgagttaacttttaaaatgagattcagatatatttaatatgatatcaaaatcgggtaaaggattttaatattgaaattagacttgtgcgtgact |
39502604 |
T |
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| Q |
417 |
cacattaaacgtgagggtggatatttaaggtgtattggagctcctctcaaccnnnnnnnnntaagaaaaaggttgtgttggactttcatattgctcaaat |
516 |
Q |
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| T |
39502605 |
cacattaaacgtgagggtggatatttaagttgtattggggctcctctcaaccaaaaaaaaaaaagataaaggttgtgttggactttcatattgctcaaat |
39502704 |
T |
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| Q |
517 |
ttacgaaatg |
526 |
Q |
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|||||||||| |
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| T |
39502705 |
ttacgaaatg |
39502714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 24352616 - 24352649
Alignment:
| Q |
125 |
ttaagaaaaattggtagtataattaatatatata |
158 |
Q |
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| T |
24352616 |
ttaagaaaaattggtagtataattaatacatata |
24352649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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