View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11899_low_2 (Length: 498)
Name: NF11899_low_2
Description: NF11899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11899_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 85 - 339
Target Start/End: Complemental strand, 47351962 - 47351708
Alignment:
| Q |
85 |
aatcaacagaagcttgcaaagcaatcacttcacagtaatttgtgacgccattagactttttcatatcagattaaaaactcaaagccggatgaatataacg |
184 |
Q |
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| T |
47351962 |
aatcaacagaagcttgccaagcaatcacttcacagtaatttgtgacgccattagactttttcatatcagattaaaaactcaaagccggatgaatataagg |
47351863 |
T |
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| Q |
185 |
aatctagagagcaggagtatggtttaaaatactaaatcatgtgttccaattatcagctcttattgattaacactctaataatctaagaaagttcttctag |
284 |
Q |
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| T |
47351862 |
aatctagaaagcaggagtatggtttaaaatactaaatcatgtgttccaattataagctcttattgattaactctctaataatctaagaaagttcttctag |
47351763 |
T |
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| Q |
285 |
tccacccattttccatcctctgccgagaaaaagcaacgaatgaaactaaaacttt |
339 |
Q |
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| T |
47351762 |
tccacccattttccatcctctgccgagaaaaagcaacgaatgaaactaaaacttt |
47351708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 331 - 437
Target Start/End: Complemental strand, 47351093 - 47350987
Alignment:
| Q |
331 |
taaaactttttacatgtataaaaattgatctctagttattatgtataactactagaattgtttttgttgaatcaaattcttatgtgagtgttggttgata |
430 |
Q |
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| T |
47351093 |
taaaactttttacatgtataaaaattgatctctagttattatgtataactactaaaattgtttttgttggatcaaattcttatgtgagtcttgtttgata |
47350994 |
T |
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| Q |
431 |
tcttttg |
437 |
Q |
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| T |
47350993 |
ttttttg |
47350987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 47352594 - 47352533
Alignment:
| Q |
18 |
gaagagacggtagagagtgggatagaggagagagaaaggcaatttggtgaggttgatgcata |
79 |
Q |
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| T |
47352594 |
gaagagacggtagagagtgggatagaggagagagaaaggcaatttggtgaggttgatgcata |
47352533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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