View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11899_low_3 (Length: 456)
Name: NF11899_low_3
Description: NF11899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11899_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 37704454 - 37704859
Alignment:
| Q |
18 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
|
| Q |
118 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
|
| Q |
218 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
317 |
Q |
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| T |
37704654 |
gaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaa |
37704753 |
T |
|
| Q |
318 |
aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37704754 |
aataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataaca |
37704853 |
T |
|
| Q |
418 |
aatcgg |
423 |
Q |
| |
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|||||| |
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| T |
37704854 |
aatcgg |
37704859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 37698974 - 37699349
Alignment:
| Q |
19 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
116 |
Q |
| |
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|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
|
| Q |
117 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||| |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
|
| Q |
216 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatg |
312 |
Q |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
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| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatg |
37699273 |
T |
|
| Q |
313 |
aagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
382 |
Q |
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| T |
37699274 |
aagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 37437520 - 37437823
Alignment:
| Q |
18 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
117 |
Q |
| |
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||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
|
| Q |
118 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca |
216 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |
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| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- |
37437717 |
T |
|
| Q |
217 |
cgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatga |
313 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
37437718 |
---aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatga |
37437814 |
T |
|
| Q |
314 |
agaaaataa |
322 |
Q |
| |
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||||||||| |
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| T |
37437815 |
agaaaataa |
37437823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 37698636 - 37698864
Alignment:
| Q |
18 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | |||| |||||||||| |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa |
37698718 |
T |
|
| Q |
118 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta--- |
213 |
Q |
| |
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|||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
37698719 |
ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt |
37698810 |
T |
|
| Q |
214 |
-gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
266 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37698811 |
agcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
146 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
244 |
Q |
| |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
245 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
328 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
329 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
382 |
Q |
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||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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