View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11899_low_4 (Length: 426)
Name: NF11899_low_4
Description: NF11899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11899_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 3464262 - 3464657
Alignment:
| Q |
15 |
aagaacacgggccggggtcaatggagtgagggatgcaagacatgaccaataattgtaaaacac-aaagaagagaaatactagtcaaatggataactttta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||| |
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| T |
3464262 |
aagaacacgggccggggtcaatggagtgagggatgcaagacatgaccaataatagtaaaacactaaagaagagaaatactagtcaaatggatatcgttta |
3464361 |
T |
|
| Q |
114 |
agattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaattataccaagaatgaatgtggtcgaagtctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464362 |
agattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaattataccaagaatgaatgtggtcgaagtctt |
3464461 |
T |
|
| Q |
214 |
tgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccgatatggtcattg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464462 |
tgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccgatatggtcattg |
3464561 |
T |
|
| Q |
314 |
tttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatcacagtctcatccattattttaattaacgtcaccacttagctt |
409 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464562 |
tttgcttgggtgctacgattagagtcacaatcattccacgaagccatcttcatcacagtctcatccattattttaattaacgtcaccacttagctt |
3464657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 95 - 297
Target Start/End: Original strand, 3454009 - 3454222
Alignment:
| Q |
95 |
gtcaaatggataacttttaagattagttccaacaagaaatagatcttgtctttggtattaattatgaggtcatagcattcgtaattaatta-------ta |
187 |
Q |
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|
|||||||||||| | |||||||||| | ||| |||||||| |||||||||||||| | ||||| ||||| | | |||||||||||||||| || |
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| T |
3454009 |
gtcaaatggataccgtttaagattattcccagcaagaaattgatcttgtctttgggactaattcagaggttacatcattcgtaattaattaatgatagta |
3454108 |
T |
|
| Q |
188 |
ccaagaatgaatgtggtcgaagtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgatta----actgcttaaacccaccactaaccaag |
283 |
Q |
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|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||| || |
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| T |
3454109 |
tgaagaatgagtggggtcgaagtctttgcaaaggtgcaagcagtatcttttttcacaagaaacttagttaatgcattgcttaaacccaccaccaacttag |
3454208 |
T |
|
| Q |
284 |
cagaggatccccct |
297 |
Q |
| |
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| |||||||||||| |
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| T |
3454209 |
cggaggatccccct |
3454222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 3454439 - 3454473
Alignment:
| Q |
318 |
cttgggtgctacgattagagtcacaatcgttccac |
352 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
3454439 |
cttgggtgctacgattagagtcacaatcattccac |
3454473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 4039328 - 4039727
Alignment:
| Q |
15 |
aagaacacgggccggggtcaatggagtgagggatgcaagacatgaccaataattgtaaaacacaaagaagagaaatactagtcaaatggataacttttaa |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||| |
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| T |
4039328 |
aagaacacgggccggggtcaatggagtgagggatgcaagacatgaccaataatagtaaaacaccaagaagagaaatactagtcaaatggataccatttaa |
4039427 |
T |
|
| Q |
115 |
gatt----agttccaacaagaaatagatcttgtctttggtattaattatgag--gtcatagcattcgtaattaattataccaagaatgaatgtggtcgaa |
208 |
Q |
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|||| ||| ||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4039428 |
gattgattagtcccaacaagaaatagatcttgtataa--tattaattctgagaggtcatagcattcgtaattaattataccaagaatgaatatggtcgaa |
4039525 |
T |
|
| Q |
209 |
gtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccg--atatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4039526 |
gtctttgtaaaggtgcaagcagtatcttttttcacaagaaacttgattaactgcttaaacccaccactaaccaagcagaggatcccccttccgatatatg |
4039625 |
T |
|
| Q |
307 |
gtcattgtttgcttgggtgctacgattagagtcacaatcgttccaccaagccatcttcatcacagtctcatccattattttaattaacgtcaccacttag |
406 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4039626 |
gtcattgtttgcttgggtgctatgattagagtcacaatcattccacgaagccatcttcatcacagtctcatccattattttaattaacgtcaccagttag |
4039725 |
T |
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