View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_high_11 (Length: 456)
Name: NF11900_high_11
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 52767414 - 52767846
Alignment:
| Q |
17 |
acaaaacattacattacattacatacctgtggtagggatgggtggttgagggaaaggaagagaggttgcaccttgattagtttctgtgtgtcgtttgtaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52767414 |
acaaaacattacattacattacatacctgtggtagggatgggtggttgagggaaaggaagagaggttgcaccttgattaatttctgtgtgtcgtttgtaa |
52767513 |
T |
|
| Q |
117 |
ttgtctccatgatctcgacgacgaaacggtaacgcagagagatgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgttt |
216 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767514 |
ttgtctacatgatctctacgacgaaacggtaacgcagagagatgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgttt |
52767613 |
T |
|
| Q |
217 |
gacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccact |
316 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767614 |
gacactgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccact |
52767713 |
T |
|
| Q |
317 |
acgcctcataataccaaatcttctttcacactcatcaaacgaagaattt---nnnnnnnnnnnnnnnnnntgacccgctccaaacgcattgtaaatgttc |
413 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
52767714 |
acgcctcataataccaaatcttctttcacactcatcaaacgaagaatttctactactactactactactatgacccactccaaacgcattgtaaatgttc |
52767813 |
T |
|
| Q |
414 |
aagctttgttgtggccatatctctaaccctttg |
446 |
Q |
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| T |
52767814 |
aagctttgttgtggccatatctctaaccctttg |
52767846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 7418510 - 7418666
Alignment:
| Q |
159 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatctta |
258 |
Q |
| |
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||||| || ||||| |||||||||||||| |||||||||||||| || ||||| |||||||| |||||||||||||| || ||||||||||| ||||| | |
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| T |
7418510 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
7418609 |
T |
|
| Q |
259 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccac |
315 |
Q |
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||||| |||||||||||| |||||||||||||| || ||||| |||||||| |||| |
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| T |
7418610 |
gatgtggacaatctttcttagcttggttaccacaatcttgacagttcattccaccac |
7418666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 302
Target Start/End: Complemental strand, 32483108 - 32482965
Alignment:
| Q |
159 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatctta |
258 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| ||||||||||| || |||||||| |||||||| ||||| || ||||| |||||||||||||| ||||| | |
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| T |
32483108 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctca |
32483009 |
T |
|
| Q |
259 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaa |
302 |
Q |
| |
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|| |||||||||||| |||||||||||||| || |||||| |
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| T |
32483008 |
tgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
32482965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 13800584 - 13800522
Alignment:
| Q |
70 |
aaggaagagaggttgcaccttgattagtttctgtgtgtcgtttgtaattgtctccatgatctc |
132 |
Q |
| |
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|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
13800584 |
aaggaagagaggtttcaccttgattaatttatgtgtgtcgtttgtaattgtctccatgatctc |
13800522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 8102002 - 8101881
Alignment:
| Q |
181 |
tagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgc |
280 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| | ||| |||| ||| |||||||||||||| ||||| | ||| |||||||||||| || |
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| T |
8102002 |
tagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttcttagc |
8101903 |
T |
|
| Q |
281 |
ttggttaccacagtcctgacaa |
302 |
Q |
| |
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||| || ||||| || |||||| |
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| T |
8101902 |
ttgattcccacaatcttgacaa |
8101881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 39019366 - 39019486
Alignment:
| Q |
181 |
tagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgc |
280 |
Q |
| |
|
||||||| || |||||||||||||||||||| || | || | ||| |||| |||||||||||||||||| || ||| || |||||||||||||||| |
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|
| T |
39019366 |
tagcagcaggtacccaagtactcttaacatgagtagggcaatcaaaacctctacttttacaacaagttctacaccttctattactacaatctttctttgc |
39019465 |
T |
|
| Q |
281 |
ttggttaccacagtcctgaca |
301 |
Q |
| |
|
|||||| ||||| || ||||| |
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| T |
39019466 |
ttggtttccacaatcttgaca |
39019486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 25570321 - 25570259
Alignment:
| Q |
70 |
aaggaagagaggttgcaccttgattagtttctgtgtgtcgtttgtaattgtctccatgatctc |
132 |
Q |
| |
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|||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
25570321 |
aaggaagagaggtttcaccttaattaatttatgtgtgtcgtttgtaattgtctccatgatctc |
25570259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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