View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_high_21 (Length: 219)
Name: NF11900_high_21
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 33182893 - 33182721
Alignment:
| Q |
29 |
ccatccagttatttacggaaaaaggaggaacaaaaatgctaatcttactatgaaacgctacttacttctctccaacataaacaaaaatcattctccaaca |
128 |
Q |
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| T |
33182893 |
ccatccagttatttagggaaaaaggaggaacaaaaatgctaatcttac-atgaaatgctacttaattctctccaacataaacaaaaatcattctccaaca |
33182795 |
T |
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| Q |
129 |
acaacaacaataactttttcaggtaaactcaaatatcctcagccagcagctagagactatttcctagaactact |
202 |
Q |
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| T |
33182794 |
acaacaacaataactttttcggttgaactcaaatatcctcagccagcagctagagactaattcctagaactact |
33182721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 33183832 - 33183673
Alignment:
| Q |
31 |
atccagttatttacggaaaaaggaggaacaaaaatgctaatcttactatgaaacgctacttacttctctccaacataaacaaaaatcattctccaacaac |
130 |
Q |
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||||||||||||| || |||||||||||||| |||| | ||| || |||||| || ||||||| |||||||||| ||||||| ||||||||| | |
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| T |
33183832 |
atccagttattta-ggcaaaaggaggaacaacaatgttcatcataggatgaaatgc----tacttctttccaacataagcaaaaattattctccaatgtc |
33183738 |
T |
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| Q |
131 |
aacaacaataactttttcaggtaaactcaaatatcctcagccagcagctagagactatttcctaga |
196 |
Q |
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|||| |||||||| ||| | |||| ||||| |||||| |||||||| |||||||||| |||||||| |
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| T |
33183737 |
aacatcaataactattttatgtaacctcaagtatcct-agccagcacctagagactaattcctaga |
33183673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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