View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11900_high_5 (Length: 609)
Name: NF11900_high_5
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_high_5 |
 | |
|
| [»] scaffold0082 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Original strand, 38608238 - 38608815
Alignment:
| Q |
20 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608238 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
38608337 |
T |
|
| Q |
120 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608338 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
38608437 |
T |
|
| Q |
220 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608438 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
38608537 |
T |
|
| Q |
320 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608538 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
38608637 |
T |
|
| Q |
420 |
acactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
519 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608638 |
acactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
38608737 |
T |
|
| Q |
520 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatattctc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38608738 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
38608815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Original strand, 38793021 - 38793598
Alignment:
| Q |
20 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793021 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
38793120 |
T |
|
| Q |
120 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793121 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
38793220 |
T |
|
| Q |
220 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793221 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
38793320 |
T |
|
| Q |
320 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793321 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
38793420 |
T |
|
| Q |
420 |
acactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
519 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793421 |
acactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
38793520 |
T |
|
| Q |
520 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatattctc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38793521 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
38793598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Complemental strand, 38121885 - 38121308
Alignment:
| Q |
20 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
119 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
38121885 |
ggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaacacatagttccaggtatat |
38121786 |
T |
|
| Q |
120 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
219 |
Q |
| |
|
|||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| ||| |
|
|
| T |
38121785 |
tcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcagaa |
38121686 |
T |
|
| Q |
220 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
319 |
Q |
| |
|
|| ||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121685 |
caacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
38121586 |
T |
|
| Q |
320 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
419 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38121585 |
ggtttcgcctctaagctttctccgttttcttgcgacgttgagagaatgagttctctctcctttccgtttcatcctgatcaccgttccggtgctcatgttc |
38121486 |
T |
|
| Q |
420 |
acactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
519 |
Q |
| |
|
||||| |||| | ||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121485 |
acactcccggcgccaccgtgctccctgctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgc |
38121386 |
T |
|
| Q |
520 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatattctc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38121385 |
tatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatgatctttctatattctc |
38121308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Complemental strand, 28731459 - 28730882
Alignment:
| Q |
20 |
ggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttat |
119 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28731459 |
ggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatat |
28731360 |
T |
|
| Q |
120 |
tcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaa |
219 |
Q |
| |
|
|||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| ||||||||| |||| |
|
|
| T |
28731359 |
tcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccgaa |
28731260 |
T |
|
| Q |
220 |
cattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaa |
319 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731259 |
cagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaa |
28731160 |
T |
|
| Q |
320 |
ggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttc |
419 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28731159 |
ggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttc |
28731060 |
T |
|
| Q |
420 |
acactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgc |
519 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731059 |
acactcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgc |
28730960 |
T |
|
| Q |
520 |
gatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatgatctttctatattctc |
597 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28730959 |
aatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
28730882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 31529401 - 31529212
Alignment:
| Q |
32 |
attttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagt |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
31529401 |
attttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaat |
31529302 |
T |
|
| Q |
132 |
atttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
221 |
Q |
| |
|
|| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
31529301 |
atctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccgaaca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 51801469 - 51801280
Alignment:
| Q |
32 |
attttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagt |
131 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||| | | |
|
|
| T |
51801469 |
attttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaacacatcgttccagatatattcaccatcaaat |
51801370 |
T |
|
| Q |
132 |
atttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
221 |
Q |
| |
|
| | || ||| |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
51801369 |
acctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccgaaca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 34875819 - 34876008
Alignment:
| Q |
32 |
attttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagt |
131 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
34875819 |
atttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaat |
34875918 |
T |
|
| Q |
132 |
atttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
221 |
Q |
| |
|
|| | || ||| |||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
34875919 |
atctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccgaaca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 272 - 399
Target Start/End: Complemental strand, 34165 - 34038
Alignment:
| Q |
272 |
caaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgactt |
371 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| ||||| | || |||||||||| ||| ||||| ||||| ||||| | |
|
|
| T |
34165 |
caacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctctccgctctctccgttttattgcgacgtggagaggatgacct |
34066 |
T |
|
| Q |
372 |
cactctcctttccgtttcatcctgatca |
399 |
Q |
| |
|
| ||||| || ||||| ||||| ||||| |
|
|
| T |
34065 |
cgctctcgttcccgttccatccagatca |
34038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 543
Target Start/End: Complemental strand, 33997 - 33897
Alignment:
| Q |
443 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
542 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| |||||| |||||||||| || || ||||||||||| |||| || |||||||| || ||||| |||| |
|
|
| T |
33997 |
cctgctataatgcgcctgatgctcagagatgccatgctccggctccgtaacaatggcttcagcatcctagccctcgctatgaaggtgaagtacgccgagc |
33898 |
T |
|
| Q |
543 |
t |
543 |
Q |
| |
|
| |
|
|
| T |
33897 |
t |
33897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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