View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_high_7 (Length: 550)
Name: NF11900_high_7
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 28677759 - 28677222
Alignment:
| Q |
13 |
agaaccaacaattgacaatttgatcattgaagctcactggcctaccataggtagacaaaatgaaggaatacatagattttggacaacttcaaactgattc |
112 |
Q |
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| T |
28677759 |
agaaccaacaattgacaatttgatcattgaagctcactggcctaccataggtagacaaaatgaaggaatacatagattttggacaacttcgaactgattc |
28677660 |
T |
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| Q |
113 |
atatttcaaacagggtagccaactgattccatatagacatagttcactggaatattgctataaagttcgaccaaaagaactaattagattttatttattt |
212 |
Q |
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| T |
28677659 |
atatttcaaacagggtagccaactgattccatatagacatagttcactggaatattgctataaagttcgaccaaaagaactaattagattttatttattt |
28677560 |
T |
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| Q |
213 |
tattgactttatttagtatctttgctaagcatccctatattgggttttgctgtatctgcagaaaatggggaagcaagtcatcaagacaatgagatgtttg |
312 |
Q |
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| T |
28677559 |
tattgactttatttagtatctttgctaagcatccctatattgggttttgctgtatctgcagaaaatggggaagcaagtcatcaagacaatgagatgtttg |
28677460 |
T |
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| Q |
313 |
cagaacctgaaactgttaacaacattcaagaagatttgttcaatgatatatatgataaagctaccgaagtgagtttaatttcttttaaacattgttcttt |
412 |
Q |
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| T |
28677459 |
cagaacctgaaactgttaacaacattcaagaagatttgttcaatgatatatatgataaagctaccgaagtgagtttaatttcttttaaacattgttcttt |
28677360 |
T |
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| Q |
413 |
tatcatcatgtaagaatatctatttgtttctttgttaaaacacatctgaacattttcttttgtgaaaggaaatctgttaaaacacttttggtaacttgtc |
512 |
Q |
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| T |
28677359 |
tatcatcatgtaagaatatctatttgtttctttgttaaaacacatctgaacattttcttttgtgaaaggaaatctgttaaaacacttttggtaacttgtc |
28677260 |
T |
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| Q |
513 |
ttcattatatgaccattctcacaaatttgtgagtaatc |
550 |
Q |
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| T |
28677259 |
ttcattatatgaccattctcacaaatttgtgagtaatc |
28677222 |
T |
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