View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11900_low_10 (Length: 548)
Name: NF11900_low_10
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 3 - 531
Target Start/End: Original strand, 4865839 - 4866367
Alignment:
| Q |
3 |
gtttccatgccattttcactcagcacggtcgtgcgcatcttttgtctggttgtgcgtccctgattggtgtggttgtgcgcaggaacaatgagtgacatgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
4865839 |
gtttccatgccattttcactcagcacggtcgtgcgcatcttttgtctggtcgtgcgtccctgattggtgtggttgtgcgcaggaacaacgattgacatgc |
4865938 |
T |
|
| Q |
103 |
acggaccctgcgccttacctgcacgatcgtgcgtcccttcataggctcatttttggacgttttgaacaataagttggaagcaagtccaggtgatacaaga |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4865939 |
acggaccctgcgccttacccgcacgatcgtgcgtcccttcataggctcatttttggacgttttgaacaataagttggaagcaagtccaggtgatacaaga |
4866038 |
T |
|
| Q |
203 |
acatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaatttgaattttctgattaccatcgtaagaatgtaaat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4866039 |
acatctcgaaaaccagagtttatgtcaccaagagtagtgatagaaagggtattaccatcagcaatttgaattttctgattaccatcgtaagaatgtaaat |
4866138 |
T |
|
| Q |
303 |
tgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacgagaaacattaggagacttaccatgaattcccatcct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4866139 |
tgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacgagaaacattaggagacttaccatgaattcccatcct |
4866238 |
T |
|
| Q |
403 |
tgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcagagctagtagtg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4866239 |
tgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcagagctagtagtg |
4866338 |
T |
|
| Q |
503 |
gcatgtaaagcttgattatcattgagata |
531 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4866339 |
gcatgtaaagcttgattatcattgagata |
4866367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 168 - 515
Target Start/End: Original strand, 35936952 - 35937299
Alignment:
| Q |
168 |
acaataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaat |
267 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||| ||||| | ||||| |||||||||||| |||||| || || ||||||| |||||||| |
|
|
| T |
35936952 |
acaataaattagaagcaagtccgggtgatacaagcacgtcttgaaaatcggagttgatgtcaccaacatcagtgatggagagtttattaccatcagcaat |
35937051 |
T |
|
| Q |
268 |
ttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacga |
367 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35937052 |
ttgaatttgttgattaccatgataagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccagaatcaagaaaccatggacga |
35937151 |
T |
|
| Q |
368 |
gaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcac |
467 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35937152 |
gaaacattagaagacttaccatgaattcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcac |
35937251 |
T |
|
| Q |
468 |
tagtaattgaaggagcagctgcagagctagtagtggcatgtaaagctt |
515 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35937252 |
tagtaattgaaggaggcgctgcagagctagtagtggcatgtaaagctt |
35937299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 168 - 516
Target Start/End: Original strand, 26626107 - 26626455
Alignment:
| Q |
168 |
acaataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaat |
267 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||| ||||| ||||||| |||||||||||| |||||| || || ||||||| |||||||| |
|
|
| T |
26626107 |
acaataaattagaagcaagtccgggtgatacaagcacgtcttgaaaatcagagttgatgtcaccaacatcagtgatggagagtttattaccatcagcaat |
26626206 |
T |
|
| Q |
268 |
ttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacga |
367 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26626207 |
ttgaatttgttgattaccatgataagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccagaatcaagaaaccatggacga |
26626306 |
T |
|
| Q |
368 |
gaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcac |
467 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26626307 |
gaaacattagaagacttaccatgaattcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcac |
26626406 |
T |
|
| Q |
468 |
tagtaattgaaggagcagctgcagagctagtagtggcatgtaaagcttg |
516 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26626407 |
tagtaattgtaggaggcgctgcagagctagtagtggcatgtaaagcttg |
26626455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 168 - 516
Target Start/End: Complemental strand, 49118013 - 49117665
Alignment:
| Q |
168 |
acaataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaat |
267 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||| ||||| ||||||| |||||||||||| |||||| || || ||||||| |||||||| |
|
|
| T |
49118013 |
acaataaattagaagcaagtccgggtgatacaagcacgtcttgaaaatcagagttgatgtcaccaacatcagtgatggagagtttattaccatcagcaat |
49117914 |
T |
|
| Q |
268 |
ttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacga |
367 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49117913 |
ttgaatttgttgattaccatgataagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccagaatcaagaaaccatggacga |
49117814 |
T |
|
| Q |
368 |
gaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcac |
467 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49117813 |
gaaacattagaagacttaccatgaattcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcac |
49117714 |
T |
|
| Q |
468 |
tagtaattgaaggagcagctgcagagctagtagtggcatgtaaagcttg |
516 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49117713 |
tagtaattgtaggaggcgctgcagagctagtagtggcatgtaaagcttg |
49117665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 246 - 516
Target Start/End: Original strand, 15821052 - 15821320
Alignment:
| Q |
246 |
aaagggtattaccgtcagcaatttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcacc |
345 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15821052 |
aaagggtattaccagcaacaatttgaattttctgattaccataataagaatgtaa-ttgtgcaagtattcagaggaacccgtcatgtgattggatgcact |
15821150 |
T |
|
| Q |
346 |
ggaatcaagaaaccatggacgagaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||||||| |||||| |||| |
|
|
| T |
15821151 |
cgaatcaagaaaccatggacgagaaacattaggagacttaccatgaattccaatgtttgaaagagcagcaagtacaatttgttgaatcttttcag-ctgt |
15821249 |
T |
|
| Q |
446 |
agagaaccaccatcagatgcactagtaattgaaggagcagctgcagagctagtagtggcatgtaaagcttg |
516 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | | | || |||||||| |||||||| ||||||||||||| |
|
|
| T |
15821250 |
agagaatcaccatcagatgcactagtaattaaggtatcaactgcagagatagtagtgacatgtaaagcttg |
15821320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 168 - 451
Target Start/End: Original strand, 26635518 - 26635801
Alignment:
| Q |
168 |
acaataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaat |
267 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| || ||| ||||| ||||||| |||||||||||| |||||| || || ||||||| |||||||| |
|
|
| T |
26635518 |
acaataaattagaagcaagtccgggtgatacaaacacgtcttgaaaatcagagttgatgtcaccaacatcagtgatggagagtttattaccatcagcaat |
26635617 |
T |
|
| Q |
268 |
ttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacga |
367 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26635618 |
ttgaatttgttgattaccatgataagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccagaatcaagaaaccatggacga |
26635717 |
T |
|
| Q |
368 |
gaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaa |
451 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
26635718 |
gaaacattagaagacttaacatgaattcccatatatgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaa |
26635801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 168 - 516
Target Start/End: Complemental strand, 21691959 - 21691609
Alignment:
| Q |
168 |
acaataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaat |
267 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || | |||||| | ||||| |||||||||||| |||||| || ||| |||| || |||||||| |
|
|
| T |
21691959 |
acaataaattagaagcaagtccgggtgatacaagcacgttacgaaaatcggagttgatgtcaccaacatcagtgatggagaggttatttccatcagcaat |
21691860 |
T |
|
| Q |
268 |
ttgaattttctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacga |
367 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21691859 |
ttgaatttgttgattaccatgataagaagctaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccagaatcaagaaaccatggacga |
21691760 |
T |
|
| Q |
368 |
gaaacattaggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagat--gc |
465 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| || |
|
|
| T |
21691759 |
gaaacattagaagacttaacatgaattcccatatatgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaagcaccatcagatgcgc |
21691660 |
T |
|
| Q |
466 |
actagtaattgaaggagcagctgcagagctagtagtggcatgtaaagcttg |
516 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
21691659 |
actagtaattgaaggagtcgctgcagagctagtagtagcatgtaaagcttg |
21691609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 176 - 445
Target Start/End: Original strand, 17605682 - 17605951
Alignment:
| Q |
176 |
ttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaatttgaattt |
275 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
17605682 |
ttggaagcaagtccaggtgatacaagcacatcccgaaaatcagagtttatgtcaccaacatcagtgatagaaagagtattaccatcggcaatttgaattt |
17605781 |
T |
|
| Q |
276 |
tctgattaccatcgtaagaatgtaaattgtgcaagtattcagaggaacccgtcatgtgattggatgcaccggaatcaagaaaccatggacgagaaacatt |
375 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
17605782 |
tcttattaccatcataagaatgtaaattgtgcaagtattctaaggaacccgtcatgtgataggatgcgccagaatcaagaaaccatgggtgagaagcatt |
17605881 |
T |
|
| Q |
376 |
aggagacttaccatgaattcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgt |
445 |
Q |
| |
|
| ||||||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17605882 |
tgaagacttaccctgaattccaattgatggaagagcagaaattaccatttgttgaatcatttcagactgt |
17605951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 17039435 - 17039323
Alignment:
| Q |
169 |
caataagttggaagcaagtccaggtgatacaagaacatctcgaaaaccagagtttatgtcaccaacagtagt----gatagaaagggtattaccgtcagc |
264 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||| ||| | |
|
|
| T |
17039435 |
caataggttggaagcaagtccaggtgatacaagcacatctcgaaaatcagagtttatgttaccaacattagtgatcgatagaaagggtattaccatcatc |
17039336 |
T |
|
| Q |
265 |
aatttgaattttc |
277 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17039335 |
aatttgaattttc |
17039323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 27985394 - 27985462
Alignment:
| Q |
219 |
agtttatgtcaccaacagtagtgatagaaagggtattaccgtcagcaatttgaattttctgattaccat |
287 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27985394 |
agtttatgacaccaacattagtgatacaaagagtattaccgtcaacaatttgaattttctgagtaccat |
27985462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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