View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_11 (Length: 524)
Name: NF11900_low_11
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 218 - 524
Target Start/End: Complemental strand, 3830517 - 3830217
Alignment:
| Q |
218 |
cctcaatactcaacacagcttcaggcaaaagctcctgcggtgtctcatgaacagacaacatatccaactgtgcccatcacgcttaaacacgtcatcctta |
317 |
Q |
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| T |
3830517 |
cctcaatactcaacacaacttcaggcaaaagctcctgcggtgtctcatgaacagacaacatatccaactgtgcccatcacgcttaaacatgtcatcctta |
3830418 |
T |
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| Q |
318 |
ctatcaaagaaaacgtgtaaaatcgaacctatgcttgtaacgccacaattcatattatgaacagtttcagattatataatttaaaacatgccaaaactat |
417 |
Q |
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| T |
3830417 |
ctgtcaaagaaaacgtgtaaa-tcgaacctatgcttgtaacgccacaattcatattatgaacagtttcagattatataatttgaaacataccaaaactat |
3830319 |
T |
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| Q |
418 |
gttaaaacttgtgtttcggaggatttgatttattccagattatattatataatctgaacacgaaaaatagaaaaatcgtccattaaatcaaattctacaa |
517 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3830318 |
gttaaaacttgtgttttggaggatttgatatattccagatt-----atataatctgaacacgaaaaatagaaaaatcgtccattaaatcaaattctacaa |
3830224 |
T |
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| Q |
518 |
taacaac |
524 |
Q |
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|||||| |
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| T |
3830223 |
caacaac |
3830217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 3831230 - 3831115
Alignment:
| Q |
27 |
atgcacattatttaaatacatgtttgaattgaaagtaaaaccaacagagtcgaattagcttacactttagagattttcaaactcacaatattttactaaa |
126 |
Q |
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| T |
3831230 |
atgcacattatttaaatacatgtttgaattgaaagtaaaaccaacagagtcgaattagcttacactttagagattttcaaactcacactattttactaaa |
3831131 |
T |
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| Q |
127 |
ctaaccaatacaatca |
142 |
Q |
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| T |
3831130 |
ttaaccaatacaatca |
3831115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 3831115 - 3831087
Alignment:
| Q |
179 |
aaaatgctgaagaatgtccctaagaaaaa |
207 |
Q |
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| T |
3831115 |
aaaatgctgaagaatgtccctaagaaaaa |
3831087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 21834571 - 21834524
Alignment:
| Q |
383 |
ttcagattatataatttaaaacatgccaaaactatgttaaaacttgtg |
430 |
Q |
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| T |
21834571 |
ttcagattatataattcaaaatgtgcccaaactatgttaaaacttgtg |
21834524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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