View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_13 (Length: 449)
Name: NF11900_low_13
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 125 - 316
Target Start/End: Original strand, 4219856 - 4220048
Alignment:
| Q |
125 |
taataaactttaaactacaatcataaaagaaaacacacgtagtaaatatttgatgctgtattgaattcccacacgttttcaatttt-tgaaaataatttt |
223 |
Q |
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| T |
4219856 |
taatcaaccttaaactacaatcataaaaggaaacacacgtagtaaatatttgatgttgtattgaattccaacatattttcaattttttgaaaataatttt |
4219955 |
T |
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| Q |
224 |
cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaaaagtaccaatattctcattgatcatatactatatatgacaaaaatca |
316 |
Q |
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| T |
4219956 |
cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaatagtactaatattctcattgatcatatactatatatgacaaaaatca |
4220048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 4219678 - 4219745
Alignment:
| Q |
19 |
ttcacatgactacactactaccttaggaagaaaattataattcaaccaccacaacaaaccactatgtc |
86 |
Q |
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| T |
4219678 |
ttcacatgactacagtactatattaggaagaaaattataattcaaccaccacaacaaaccactatgtc |
4219745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 4219745 - 4219779
Alignment:
| Q |
99 |
ccatttattccttctatctaattaattaataaact |
133 |
Q |
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| T |
4219745 |
ccatttattccttctatctaattaattaacaaact |
4219779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 432
Target Start/End: Original strand, 4220323 - 4220373
Alignment:
| Q |
382 |
aataatttttatttgtcggtgaaacctcaaacaaatttaaatacatagata |
432 |
Q |
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| T |
4220323 |
aataatttttatttataggtgaagcctaaaacaaatttaaatagatagata |
4220373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 5388858 - 5388903
Alignment:
| Q |
225 |
ctcacgcaaaatcaaatttaattcattcact--tcatttaaggaaa |
268 |
Q |
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| T |
5388858 |
ctcacgcaaaaccaaatttaattcattcacttctcatttaaggaaa |
5388903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 13563720 - 13563796
Alignment:
| Q |
201 |
tttcaatttt-tgaaaataattttcctcacgcaaaatcaaatttaattcattcactt--catttaaggaaaaaagta |
274 |
Q |
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| T |
13563720 |
tttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagta |
13563796 |
T |
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