View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11900_low_14 (Length: 444)
Name: NF11900_low_14
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 27 - 426
Target Start/End: Original strand, 7036744 - 7037143
Alignment:
| Q |
27 |
caacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccctccatcaacattttatacgtttcttttaccga |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036744 |
caacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccctccatcaacattttatacgtttcttttaccga |
7036843 |
T |
|
| Q |
127 |
atacatatttcgtgtgtcctgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctctccaaccctctctaaacaccccatctctttc |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036844 |
atacatatttcgtgtgtcttgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctctccaaccctctctaaacaccccatctctttc |
7036943 |
T |
|
| Q |
227 |
tcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcattttcctagaagggcattaaatccccaaatta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036944 |
tcaccatatctatttgatagaacactgtaccaatgccaaaaaccctcatttcttaatttcaactttcattttcctagaagggcattaaatccccaaatta |
7037043 |
T |
|
| Q |
327 |
tttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctgacaatcctgatttaataataaccatgcaaccactgatg |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7037044 |
tttattcccaatccccctcttctattgggaataaaaagagagaaaatagactaggagagctgacaatcctgatttaataataaccatgcaaccaccgatg |
7037143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University