View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11900_low_15 (Length: 442)
Name: NF11900_low_15
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 40012687 - 40013096
Alignment:
| Q |
19 |
aatacccagtcatccaactgtaaaatcagagaaatgcttattattgcatcgagttcaagtactacgaataaagggtcacagtcacactatgaataaatgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40012687 |
aatacccagtcatccaactgtaaaatcagagaaatgcttattattgcatcgagttcaagtactacgaataaagggtcacagtcacactatgaataaatgc |
40012786 |
T |
|
| Q |
119 |
ttattgcttgagaacttacccgcatcgaacctttgagtttaaacgatttcgtcgttgtgtcaaccaatctatattcgttcatgatccaatccgttttaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
40012787 |
ttattgcttgagaacttacccgcatcgaacctttgagtttaaacgatttcgccgttgtgtcaaccaatctatattcgttcatgatccaatctgtcttaac |
40012886 |
T |
|
| Q |
219 |
tcccttaggaggtctacctgaataaaacacaagagctttcttcactcctatatgctttgattcacatgaagaaattattggcttatcagttccagttgcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40012887 |
tcccttaggaggtctacctgaataaaacacaagagctttcttcactcctatatgctttgattcacatgaagaaattattggcttatcagttccagttgcc |
40012986 |
T |
|
| Q |
319 |
ttccaatatcctgaagctgctgttctatttggccttaatccattcggatactttcggtctctcggactaaagaaataccattcttcctcaccaaacaaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40012987 |
ttccaatatcctgaagctgctgttctatttggccttaatccatttggatactttcggtctctcggactaaagaaataccattcttcctcaccaaacaaag |
40013086 |
T |
|
| Q |
419 |
acttctctgc |
428 |
Q |
| |
|
|||||||||| |
|
|
| T |
40013087 |
acttctctgc |
40013096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 414
Target Start/End: Complemental strand, 33762370 - 33762254
Alignment:
| Q |
298 |
ggcttatcagttccagttgccttccaatatcctgaagctgctgttctatttggccttaatccattcggatactttcggtctctcggactaaagaaatacc |
397 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||| ||| | || |||||||| ||||||||||||||| | ||| || |||||||||||||||| |
|
|
| T |
33762370 |
ggcttatcggtaccagttgccttccaataaccagaagttgcagccctgtttggcctagctccattcggatacttcctgtcccttggactaaagaaatacc |
33762271 |
T |
|
| Q |
398 |
attcttcctcaccaaac |
414 |
Q |
| |
|
| |||| ||| |||||| |
|
|
| T |
33762270 |
actcttgctctccaaac |
33762254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 33727924 - 33727818
Alignment:
| Q |
307 |
gttccagttgccttccaatatcctgaagctgctgttctatttggccttaatccattcggatactttcggtctctcggactaaagaaataccattcttcct |
406 |
Q |
| |
|
||||||||||| |||||||| || || | ||| ||||||||||||| ||||| |||||||| | ||||| |||||||||||||||||||||| || |
|
|
| T |
33727924 |
gttccagttgctttccaatacccagatccagctactctatttggccttgtcccatttggatacttcctatctcttggactaaagaaataccattctttct |
33727825 |
T |
|
| Q |
407 |
caccaaa |
413 |
Q |
| |
|
| ||||| |
|
|
| T |
33727824 |
ccccaaa |
33727818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 40733773 - 40733887
Alignment:
| Q |
304 |
tcagttccagttgccttccaatatcctgaagctgctgttctatttggccttaatccattcggatactttcggtctctcggactaaagaaataccattctt |
403 |
Q |
| |
|
|||||||||||||| |||||||| ||| | | |||| |||||| ||||| ||||| || |||||||||| ||| || ||| |||||||||||||||||| |
|
|
| T |
40733773 |
tcagttccagttgctttccaataacctacaccagctgctctattaggcctcaatcctttgggatactttctgtcccttggagtaaagaaataccattctt |
40733872 |
T |
|
| Q |
404 |
cctcaccaaacaaag |
418 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40733873 |
cctcaccaaacaaag |
40733887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University