View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11900_low_16 (Length: 386)

Name: NF11900_low_16
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11900_low_16
NF11900_low_16
[»] chr3 (21 HSPs)
chr3 (13-370)||(50765808-50766164)
chr3 (188-297)||(50823965-50824068)
chr3 (188-297)||(50851792-50851895)
chr3 (13-83)||(2088854-2088924)
chr3 (13-109)||(45730623-45730719)
chr3 (16-83)||(33000837-33000904)
chr3 (13-83)||(39530807-39530877)
chr3 (13-83)||(39531850-39531920)
chr3 (17-83)||(50150733-50150799)
chr3 (13-84)||(46688418-46688489)
chr3 (13-81)||(53901583-53901651)
chr3 (20-83)||(1031828-1031891)
chr3 (13-79)||(4067942-4068008)
chr3 (13-99)||(46690328-46690414)
chr3 (232-300)||(45005504-45005572)
chr3 (18-81)||(23561164-23561227)
chr3 (13-80)||(32999812-32999879)
chr3 (66-101)||(47854504-47854539)
chr3 (19-81)||(21127939-21128001)
chr3 (19-99)||(7921683-7921763)
chr3 (23-83)||(23559831-23559891)
[»] scaffold0009 (1 HSPs)
scaffold0009 (13-83)||(205586-205656)
[»] chr8 (27 HSPs)
chr8 (13-99)||(9189390-9189476)
chr8 (13-105)||(4534024-4534116)
chr8 (13-84)||(4535063-4535133)
chr8 (13-82)||(16346112-16346181)
chr8 (13-99)||(12818750-12818836)
chr8 (13-83)||(22914224-22914294)
chr8 (232-304)||(278967-279039)
chr8 (232-304)||(636813-636885)
chr8 (232-304)||(822616-822688)
chr8 (13-104)||(12820132-12820223)
chr8 (13-79)||(9190476-9190542)
chr8 (13-99)||(22913188-22913274)
chr8 (232-300)||(2623231-2623299)
chr8 (49-83)||(2419886-2419920)
chr8 (17-99)||(35463027-35463109)
chr8 (244-304)||(279742-279802)
chr8 (244-304)||(636050-636110)
chr8 (244-304)||(821853-821913)
chr8 (19-99)||(22621174-22621254)
chr8 (19-99)||(34616125-34616205)
chr8 (18-81)||(41522727-41522790)
chr8 (13-98)||(23768519-23768604)
chr8 (19-83)||(8095358-8095422)
chr8 (19-83)||(22619907-22619971)
chr8 (49-105)||(35462657-35462713)
chr8 (66-102)||(37276330-37276366)
chr8 (23-87)||(39220687-39220751)
[»] chr6 (14 HSPs)
chr6 (13-99)||(1757528-1757614)
chr6 (13-81)||(27107195-27107263)
chr6 (13-81)||(27149001-27149069)
chr6 (13-83)||(27108208-27108278)
chr6 (13-83)||(27150005-27150075)
chr6 (13-82)||(1692087-1692156)
chr6 (13-99)||(11724330-11724416)
chr6 (19-81)||(14326167-14326229)
chr6 (19-81)||(14419177-14419239)
chr6 (13-77)||(1693015-1693079)
chr6 (19-99)||(13800027-13800107)
chr6 (13-77)||(14174121-14174185)
chr6 (13-77)||(14178657-14178721)
chr6 (232-304)||(30921578-30921650)
[»] chr5 (18 HSPs)
chr5 (13-83)||(24070417-24070487)
chr5 (13-83)||(11907195-11907265)
chr5 (13-99)||(23679143-23679229)
chr5 (13-99)||(23855583-23855669)
chr5 (13-83)||(39134679-39134749)
chr5 (13-99)||(39135682-39135768)
chr5 (13-82)||(8284278-8284347)
chr5 (18-86)||(8188239-8188307)
chr5 (13-81)||(24071477-24071545)
chr5 (18-83)||(12830977-12831042)
chr5 (236-304)||(17116464-17116532)
chr5 (19-99)||(32735519-32735599)
chr5 (13-72)||(4904227-4904285)
chr5 (36-99)||(7426637-7426700)
chr5 (232-302)||(17115738-17115808)
chr5 (66-99)||(5820770-5820803)
chr5 (19-104)||(12861540-12861625)
chr5 (18-83)||(12862957-12863022)
[»] chr7 (15 HSPs)
chr7 (13-99)||(37781953-37782039)
chr7 (13-83)||(29344176-29344246)
chr7 (13-99)||(47537074-47537160)
chr7 (13-104)||(47928464-47928555)
chr7 (13-83)||(40881103-40881173)
chr7 (13-77)||(29345112-29345176)
chr7 (20-99)||(29408242-29408321)
chr7 (21-99)||(4974091-4974169)
chr7 (13-83)||(33071672-33071742)
chr7 (13-83)||(47927391-47927461)
chr7 (19-108)||(35315262-35315351)
chr7 (19-99)||(132039-132119)
chr7 (66-101)||(8394023-8394058)
chr7 (19-81)||(13287034-13287096)
chr7 (66-98)||(38408361-38408393)
[»] chr1 (19 HSPs)
chr1 (13-99)||(43808555-43808641)
chr1 (13-83)||(21246509-21246579)
chr1 (20-106)||(45042598-45042684)
chr1 (13-97)||(43807433-43807517)
chr1 (19-107)||(40110692-40110780)
chr1 (13-96)||(9822651-9822733)
chr1 (188-333)||(25476032-25476172)
chr1 (13-83)||(30743099-30743169)
chr1 (23-83)||(26803260-26803320)
chr1 (19-82)||(14169632-14169695)
chr1 (23-98)||(40811192-40811267)
chr1 (19-81)||(22167793-22167855)
chr1 (20-98)||(40779684-40779762)
chr1 (17-99)||(49619857-49619939)
chr1 (53-99)||(51725339-51725385)
chr1 (49-82)||(22169289-22169322)
chr1 (232-285)||(48621866-48621919)
chr1 (19-83)||(24517654-24517718)
chr1 (20-100)||(38280845-38280925)
[»] chr2 (15 HSPs)
chr2 (13-81)||(33553399-33553467)
chr2 (13-83)||(20630705-20630775)
chr2 (20-99)||(3532190-3532269)
chr2 (13-80)||(30179586-30179653)
chr2 (188-336)||(35063607-35063750)
chr2 (232-303)||(38356875-38356946)
chr2 (232-313)||(35064386-35064467)
chr2 (13-78)||(39272244-39272309)
chr2 (19-79)||(7490235-7490295)
chr2 (19-99)||(20921477-20921557)
chr2 (20-83)||(15850700-15850763)
chr2 (257-303)||(19601541-19601587)
chr2 (13-83)||(30178557-30178627)
chr2 (66-98)||(4701574-4701606)
chr2 (232-288)||(40056351-40056407)
[»] chr4 (26 HSPs)
chr4 (13-99)||(47244024-47244110)
chr4 (15-83)||(11482808-11482876)
chr4 (13-97)||(50498006-50498090)
chr4 (13-104)||(5417295-5417386)
chr4 (13-83)||(26045144-26045214)
chr4 (13-83)||(47573678-47573748)
chr4 (13-98)||(47242949-47243034)
chr4 (13-83)||(43708848-43708918)
chr4 (13-83)||(43709908-43709978)
chr4 (13-99)||(48413585-48413671)
chr4 (13-81)||(47572600-47572668)
chr4 (20-99)||(6138993-6139072)
chr4 (21-83)||(17319054-17319116)
chr4 (232-302)||(50072006-50072076)
chr4 (13-82)||(26059819-26059888)
chr4 (232-304)||(12007492-12007564)
chr4 (236-303)||(50071286-50071353)
chr4 (20-54)||(42698702-42698736)
chr4 (21-83)||(44159097-44159159)
chr4 (13-99)||(50496991-50497077)
chr4 (240-285)||(39631387-39631432)
chr4 (52-105)||(44160483-44160536)
chr4 (19-99)||(26376325-26376405)
chr4 (19-99)||(34439700-34439780)
chr4 (23-99)||(41348235-41348311)
chr4 (244-288)||(54628470-54628514)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-83)||(85110-85180)
[»] scaffold0301 (1 HSPs)
scaffold0301 (251-304)||(7855-7908)
[»] scaffold0046 (1 HSPs)
scaffold0046 (19-99)||(24855-24935)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 50765808 - 50766164
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaattttatc 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  50765808 agataaggaccaaattgaaacgtttaatagttaaaagatcaaactgagaaattaaaataaattaagggaccaagggatatattaagctgaaaattttatc 50765907  T
Q  113 acccattagaattttaccctttctcataggattagtctatgtaattgtgtacgtagatatccaattnnnnnnnnnggggaaattacacccacctcccttg 212  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         ||| |||||||||||||||||||||    
T  50765908 acccattagaattttaccctttctcataggattagtctgtgtaattgtgtacgtagatatccaattaaaaaaaa-gggaaaattacacccacctcccttg 50766006  T
Q  213 agtttcatctaaatgacactgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacaccactcttat 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50766007 agtttcatctaaatgacactgacactaacaccccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacaccactcttat 50766106  T
Q  313 tatttacaccgttaaatttccattcacataaattgatacattatcccatgatacaaat 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50766107 tatttacaccgttaaatttccattcacataaattgatacattatcccatgatacaaat 50766164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 50823965 - 50824068
Alignment:
Q  188 ggggaaattacacccacctcccttgagtttcatctaaatgacactgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttca 287  Q
    |||||||||||| ||||||||||||||||| |||||||||||      ||||||| || |||||||||||||||||||||||| |||| |||||||||||    
T  50823965 ggggaaattacatccacctcccttgagttttatctaaatgac------actaacaccctctctagtttgaaaacctacactaacctcctttaagttttca 50824058  T
Q  288 tcaattagac 297  Q
    ||||||||||    
T  50824059 tcaattagac 50824068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 50851895 - 50851792
Alignment:
Q  188 ggggaaattacacccacctcccttgagtttcatctaaatgacactgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttca 287  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||||      || |||||||||||||||||||||||| |||| |||||||||||    
T  50851895 ggggaaattacatccacctcccttgagttttatctaaatgacactaacac------cctctctagtttgaaaacctacactaacctcctttaagttttca 50851802  T
Q  288 tcaattagac 297  Q
    ||||||||||    
T  50851801 tcaattagac 50851792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 2088924 - 2088854
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||| ||||||||||||  || | ||||||||||||||||||||||||||||||    
T  2088924 agataaggaccaaattgaaacatttaataattaagggacctaactgagaaattaaaataaattaagggacc 2088854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 45730719 - 45730623
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaatttt 109  Q
    |||||||| |||||||||||||||||||| ||||  || ||||||||||||||||||||| |||||||||||   ||| |||||||| |||| ||||    
T  45730719 agataaggtccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggaccaggagatgtattaagcctaaactttt 45730623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 33000837 - 33000904
Alignment:
Q  16 taaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||| ||||||    
T  33000837 taaggaccaaattgaaacgtttaatagttaagggatcaaactgagaaattaaaataagttaggggacc 33000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 39530877 - 39530807
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||| ||||||||||||||||||| ||||  ||||| |||||||||||||||||| ||||||||||    
T  39530877 agataaggatcaaattgaaacgtttaatagttaagggatcacactgagaaattaaaataagttaagggacc 39530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 39531850 - 39531920
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||| ||| ||| ||||  ||| |||||||||||||||||||| ||||||||||    
T  39531850 agataaggaccaaattgaaacatttcatagttaagggattaaactgagaaattaaaataagttaagggacc 39531920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 50150799 - 50150733
Alignment:
Q  17 aaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||| ||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  50150799 aaggaccaaattgaaacatttaatagttaagtgaccaaactgagaaattaaaataagttaagggacc 50150733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 46688489 - 46688418
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacca 84  Q
    ||||||| |||||||| |||| ||||||||||| | ||||||| |||||||||||||||| |||| ||||||    
T  46688489 agataagaaccaaattaaaacatttaataattacaggatcaaattgagaaattaaaataagttaaaggacca 46688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 53901651 - 53901583
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||| ||||||||| |||| ||||||| ||||  ||  |||||||||||||||||||||||||||||    
T  53901651 agataaagaccaaattaaaacatttaatagttaagggactaaactgagaaattaaaataaattaaggga 53901583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 1031891 - 1031828
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||| ||||||| ||||  || || |||||||||||||||||| ||||||||||    
T  1031891 gaccaaattgaaacatttaatagttaagggaccacactgagaaattaaaataagttaagggacc 1031828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 4068008 - 4067942
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagg 79  Q
    |||||||||||||||| |||| ||||||| ||||  ||| ||||||| |||||||||||| ||||||    
T  4068008 agataaggaccaaattaaaacatttaatagttaagggattaaactgataaattaaaataagttaagg 4067942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 46690328 - 46690414
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||| || |||||| |||||||||||| ||||  ||| || ||| ||||||||||||| ||||||||||  ||||| ||||||||    
T  46690328 agataaagatcaaattaaaacgtttaatagttaagggattaagctgggaaattaaaataagttaagggaccggaggatgtattaagc 46690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 45005572 - 45005504
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaa 300  Q
    ||||||||||||  || ||||||| |||||  ||||| |||||||||||||| ||||||| ||||||||    
T  45005572 tgacactaacatttccactagttttaaaactcacactgatctcccttaagttctcatcaaatagacaaa 45005504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 23561164 - 23561227
Alignment:
Q  18 aggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||| | ||  |||||||||||  ||||||||||||||| |||||||| ||||||||    
T  23561164 aggaccaaattaagacacttaataattaagggatcaaactgagaaaataaaataagttaaggga 23561227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 32999879 - 32999812
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggg 80  Q
    ||||||| | |||||| |||| ||||||| ||||  || ||||||||||||||||||||| |||||||    
T  32999879 agataagaatcaaattaaaacatttaatagttaagggaccaaactgagaaattaaaataagttaaggg 32999812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 47854539 - 47854504
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaagctt 101  Q
    |||||||||||||||||||||| |||||||||||||    
T  47854539 aaaataaattaagggaccaaagcatatattaagctt 47854504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21128001 - 21127939
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||||||||| ||  |||||| |||| |||||||||||| ||| |||||||| ||||||||    
T  21128001 ggaccaaattgacacacttaatagttaagagatcaaactgaaaaaataaaataagttaaggga 21127939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 7921683 - 7921763
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||| |||| ||  |||||| ||||  |||||||||||||||  ||||||| ||||||||||  ||||| ||||||||    
T  7921683 ggaccaatttgagacacttaatagttaagtgatcaaactgagaaaacaaaataagttaagggaccggaggatgtattaagc 7921763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 23559891 - 23559831
Alignment:
Q  23 caaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||| ||  |||||||||||  || |||||||||||| |||||||| ||||||||||    
T  23559891 caaattgagacacttaataattaagggaccaaactgagaaaataaaataagttaagggacc 23559831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 205586 - 205656
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||||||||    
T  205586 agataaggaccaaattgaaacgtttaataattaagggaccaaactgagaaattaaaataagttaagggacc 205656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 9189476 - 9189390
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||||||||||| ||||  || || |||||||||||||||||||||||||||||  ||||| ||||||||    
T  9189476 agataaggaccaaattgaaacgtttaatagttaagggaccacactgagaaattaaaataaattaagggaccggaggatgtattaagc 9189390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 4534116 - 4534024
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaa 105  Q
    ||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| |||||||||  | |||| |||||||| |||||    
T  4534116 agataaggaccaaattgaaacatttaatatttaaaggaccaaactgagaaattaaaataagttaagggactgagggatgtattaagcctaaaa 4534024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 4535063 - 4535133
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacca 84  Q
    ||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||    
T  4535063 agataaggaccaaattgaaacgtttaataat-aagtgaccaaactgagaaattaaaataaattaagggacca 4535133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 16346181 - 16346112
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggac 82  Q
    ||||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||| |||||||||    
T  16346181 agataaggaccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggac 16346112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 12818836 - 12818750
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||| ||||||||||||| |||||||| ||||  || ||||||||||||||||||||| ||||||||||   |||||||||||||    
T  12818836 agataatgaccaaattgaaatgtttaatagttaagggaccaaactgagaaattaaaataagttaagggaccggtggatatattaagc 12818750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 22914224 - 22914294
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||| ||||||||||||||||||| ||||  ||||||||||| |||||||||||| ||||||||||    
T  22914224 agataaggatcaaattgaaacgtttaatagttaatggatcaaactgaaaaattaaaataagttaagggacc 22914294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 278967 - 279039
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||| ||||||||| |||||| ||||| |||| |||||||||||||||||| ||||| | ||||||||||    
T  278967 tgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacc 279039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 636885 - 636813
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||| ||||||||| |||||| ||||| |||| |||||||||||||||||| ||||| | ||||||||||    
T  636885 tgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacc 636813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 822688 - 822616
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||| ||||||||| |||||| ||||| |||| |||||||||||||||||| ||||| | ||||||||||    
T  822688 tgacactgacatcccctttagttttaaaacttacattaatctcccttaagtttttatcaaattgacaaacacc 822616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 12820132 - 12820223
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaa 104  Q
    |||||||||||||||| |||||||||||| ||||  || | ||||||||||||||||||| || |||||||   |||| |||||||| ||||    
T  12820132 agataaggaccaaattaaaacgtttaatagttaagggaccgaactgagaaattaaaataagtttagggaccgggggatgtattaagcctaaa 12820223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 9190476 - 9190542
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagg 79  Q
    ||||||||||||||||||||| ||||||| ||||  ||  |||||||||||||||||||| ||||||    
T  9190476 agataaggaccaaattgaaacatttaatagttaagggactaaactgagaaattaaaataagttaagg 9190542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 22913274 - 22913188
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||| ||||||||||| |||| || ||||  |||| ||||||||||||||||||| |||||| | | |||||| ||||||||    
T  22913274 agataaggatcaaattgaaacatttactagttaagggatccaactgagaaattaaaataagttaaggaatcgaaggatgtattaagc 22913188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 2623299 - 2623231
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaa 300  Q
    ||||||| ||||||| |||| ||| ||||| |||||||| ||||||| |||||||||||| ||||||||    
T  2623299 tgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaatagacaaa 2623231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 2419920 - 2419886
Alignment:
Q  49 gatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||||||||||||||||||||||    
T  2419920 gatcaaactgagaaattaaaataaattaagggacc 2419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 35463027 - 35463109
Alignment:
Q  17 aaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||| |||| || ||| ||| ||||  ||||||||||||||| |||||||| |||| ||||||| |||| ||||||||    
T  35463027 aaggaccaatttgagacattttatagttaagggatcaaactgagaaaataaaataagttaaaggaccaacggatgtattaagc 35463109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 279802 - 279742
Alignment:
Q  244 cccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    |||||||| ||| ||||| ||| |||| |||| |||||||||||||||||||| |||||||    
T  279802 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacc 279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 636050 - 636110
Alignment:
Q  244 cccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    |||||||| ||| ||||| ||| |||| |||| |||||||||||||||||||| |||||||    
T  636050 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacc 636110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 821853 - 821913
Alignment:
Q  244 cccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    |||||||| ||| ||||| ||| |||| |||| |||||||||||||||||||| |||||||    
T  821853 cccctctaattttaaaacttacgctaacctcctttaagttttcatcaattagaaaaacacc 821913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 22621174 - 22621254
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||  ||  |||||| ||||  ||||||||||||||| |||||||| |||||||||| | |||| ||||||||    
T  22621174 ggaccaaattgccacacttaatagttaagggatcaaactgagaaaataaaataagttaagggaccgagggatgtattaagc 22621254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 34616205 - 34616125
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||| ||  || ||| |||| |||||||||||||||| |||||||| |||||||| || | ||| ||||||||    
T  34616205 ggaccaaattgagacactttatagttaagagatcaaactgagaaaataaaataagttaagggatcagatgatgtattaagc 34616125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 41522727 - 41522790
Alignment:
Q  18 aggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||| ||  |||||| ||||| ||| ||||||||||| |||||||| ||||||||    
T  41522727 aggaccaaattgacacacttaatagttaaatgattaaactgagaaaataaaataagttaaggga 41522790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 23768519 - 23768604
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaag 98  Q
    ||||||||||||| || |||| ||||||| | ||  || |||||||| ||| |||||||| ||||||||||  ||||| |||||||    
T  23768519 agataaggaccaatttaaaacatttaatagtgaagggaccaaactgaaaaactaaaataagttaagggaccggaggatgtattaag 23768604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 8095422 - 8095358
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||| ||  |||||| ||||  || |||||||||||| |||||||| ||||||||||    
T  8095422 ggaccaaattgagacacttaatagttaagggaccaaactgagaaaataaaataagttaagggacc 8095358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 22619971 - 22619907
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||| ||  |||| | ||||  ||||||||||||||| |||||||| ||||||||||    
T  22619971 ggaccaaattgacacacttaaaagttaagggatcaaactgagaaaataaaataagttaagggacc 22619907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 35462713 - 35462657
Alignment:
Q  49 gatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaa 105  Q
    ||||||||||||||| |||||||| |||| |||||||  ||| |||||||| |||||    
T  35462713 gatcaaactgagaaaataaaataagttaaaggaccaacagatgtattaagcctaaaa 35462657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 37276330 - 37276366
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaagctta 102  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  37276330 aaaataaattaagggaccaaatgatgtattaagctta 37276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 39220751 - 39220687
Alignment:
Q  23 caaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaag 87  Q
    |||||||||||  |||||| |||| ||| |||| |||||||||||||||| ||||| || |||||    
T  39220751 caaattgaaacacttaatagttaatagaccaaaatgagaaattaaaataagttaagagaacaaag 39220687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 1757528 - 1757614
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||| ||||||||||  ||||| ||||||||    
T  1757528 agataaggaccaaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggaccggaggatgtattaagc 1757614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27107263 - 27107195
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||||||||||  ||||||| ||||  |||||||||||||||||||||||| ||||||||    
T  27107263 agataaggaccaaattgaaatatttaatagttaattgatcaaactgagaaattaaaataagttaaggga 27107195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27149069 - 27149001
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||||||||||  ||||||| ||||  |||||||||||||||||||||||| ||||||||    
T  27149069 agataaggaccaaattgaaatatttaatagttaattgatcaaactgagaaattaaaataagttaaggga 27149001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27108208 - 27108278
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||| ||||||| |||||||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  27108208 agataaggtccaaattaaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggacc 27108278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27150005 - 27150075
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||| ||||||| |||||||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  27150005 agataaggtccaaattaaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggacc 27150075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 1692156 - 1692087
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggac 82  Q
    |||||| ||| |||||||||| ||||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  1692156 agataaagactaaattgaaacatttaatagttaagagaccaaactgaaaaattaaaataaattaagggac 1692087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 11724330 - 11724416
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||||||||||| ||||  || || || || |||||||||||| |||||||| | | |||| ||||||||    
T  11724330 agataaggaccaaattgaaacgtttaatagttaagtgaccacaccgaaaaattaaaataagttaagggatcgagggatgtattaagc 11724416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14326229 - 14326167
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||||||||| ||| | |||||||||  ||||||||||||||| |||||||| ||||||||    
T  14326229 ggaccaaattgagacgctcaataattaagggatcaaactgagaaaataaaataagttaaggga 14326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14419239 - 14419177
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||||||||| ||| | |||||||||  ||||||||||||||| |||||||| ||||||||    
T  14419239 ggaccaaattgagacgctcaataattaagggatcaaactgagaaaataaaataagttaaggga 14419177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 1693015 - 1693079
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaa 77  Q
    |||||||||||||||| ||| |||||||| ||||  || |||||||| |||||||||||| ||||    
T  1693015 agataaggaccaaattaaaatgtttaatagttaagggaccaaactgaaaaattaaaataagttaa 1693079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 13800107 - 13800027
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||| ||  |||||| ||||  || |||||||||||| |||||||| |||||||||| | |||| ||||||||    
T  13800107 ggaccaaattgacacaattaatagttaagggaccaaactgagaaaataaaataagttaagggacctagggatgtattaagc 13800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 14174185 - 14174121
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaa 77  Q
    ||||||||| |||||||||| |||||||| |||   || ||||||||||||||||||||| ||||    
T  14174185 agataaggatcaaattgaaaagtttaatagttagtggaccaaactgagaaattaaaataagttaa 14174121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 14178721 - 14178657
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaa 77  Q
    ||||||||| |||||||||| |||||||| |||   || ||||||||||||||||||||| ||||    
T  14178721 agataaggatcaaattgaaaagtttaatagttagtggaccaaactgagaaattaaaataagttaa 14178657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 30921650 - 30921578
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||||| |||||||||||||| ||||| |||| ||| |||||||||||| | ||||  ||||| ||||||    
T  30921650 tgacactaaaatcccctctagttttaaaacatacaataaactcccttaagttctaatcatatagactaacacc 30921578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 24070487 - 24070417
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||    
T  24070487 agataaggaccaaattgaaacgtttaatagttaagggatcacactgagaaattaaaataaattaagggacc 24070417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 11907195 - 11907265
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||| ||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  11907195 agataaggaccaaattgaaacatttaatagttaagggaccaaactgagaaattaaaataagttaagggacc 11907265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 23679229 - 23679143
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||| || |||||||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||  ||||| ||||||||    
T  23679229 agataagaactaaattgaaacgtttaatagttaagggaccaaactgaaaaattaaaataaatttagggaccggaggatgtattaagc 23679143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 23855583 - 23855669
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||| || |||||||||||||||||| ||||  || |||||||| ||||||||||||||| |||||||  ||||| ||||||||    
T  23855583 agataagaactaaattgaaacgtttaatagttaagggaccaaactgaaaaattaaaataaatttagggaccggaggatgtattaagc 23855669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 39134749 - 39134679
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||| ||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||||||||    
T  39134749 agataagaaccaaattgaaacgtttaatagttaagggaccaaactgagaatttaaaataagttaagggacc 39134679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 39135682 - 39135768
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||| |||||||||||||| ||||||| ||||  || ||||||||||||||||||||| |||| |||||  ||||| ||||||||    
T  39135682 agataatgaccaaattgaaacatttaatagttaagggagcaaactgagaaattaaaataagttaaaggaccggaggatctattaagc 39135768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 8284278 - 8284347
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggac 82  Q
    |||||||||||||||| |||| ||||||| |||| |||  |||||||||||||||||||| |||||||||    
T  8284278 agataaggaccaaattaaaacatttaatagttaagagactaaactgagaaattaaaataagttaagggac 8284347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 8188239 - 8188307
Alignment:
Q  18 aggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaa 86  Q
    ||||||||||||| ||  |||||| ||||| ||||||||||| ||| |||||||| |||||||||||||    
T  8188239 aggaccaaattgacacacttaatagttaaaggatcaaactgaaaaaataaaataagttaagggaccaaa 8188307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 24071477 - 24071545
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||||||||||| ||||||||||||   |  ||||||| |||||||||||| ||||||||    
T  24071477 agataaggaccaaattgaaacatttaataattaaggaactaaactgaaaaattaaaataagttaaggga 24071545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 12830977 - 12831042
Alignment:
Q  18 aggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||| ||  |||||| ||||  ||||||||||||||| |||||||| ||||||||||    
T  12830977 aggaccaaattgagacacttaatagttaagggatcaaactgagaaaataaaataagttaagggacc 12831042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 17116532 - 17116464
Alignment:
Q  236 actaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||||||| |||||||| |||||  ||||||| |||| ||||| ||||||||| || |||||||||    
T  17116532 actaacatcccttctagttttaaaactaacactaacctcctttaagctttcatcaaatacacaaacacc 17116464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 32735519 - 32735599
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||| |||| ||||||||||||  ||||||| ||||||| |||||||  |||||||| |  ||||| ||||||||    
T  32735519 ggaccaaattaaaacatttaataattaagggatcaaattgagaaaataaaatatgttaagggatcggaggatgtattaagc 32735599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 4904285 - 4904227
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataa 72  Q
    |||||||||| |||||||||||||||||| |||| ||| || ||||| ||||||||||||    
T  4904285 agataaggac-aaattgaaacgtttaatagttaagagaccacactgaaaaattaaaataa 4904227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 7426700 - 7426637
Alignment:
Q  36 ttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||  ||| ||||| ||||| |||||||||||||||||  | ||||||||||||||    
T  7426700 ttaataattaagggattaaactaagaaaataaaataaattaagggataagaggatatattaagc 7426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 17115738 - 17115808
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaaca 302  Q
    ||||||||||| |  ||||||||| ||||| ||||| || |||||||||||| ||||||| || |||||||    
T  17115738 tgacactaacaccaactctagttttaaaacttacaccaacctcccttaagttctcatcaaatatacaaaca 17115808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 5820770 - 5820803
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||||||||||||| |||||||||||    
T  5820770 aaaataaattaagggaccaaagcatatattaagc 5820803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 12861625 - 12861540
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaa 104  Q
    ||||||| |||| ||||||  || ||||  || |||||||||||| |||||||| ||||||||| | ||||| |||||||| ||||    
T  12861625 ggaccaatttgagacgtttcttagttaagggaccaaactgagaaaataaaataagttaagggacgagaggatgtattaagcctaaa 12861540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 12862957 - 12863022
Alignment:
Q  18 aggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||| ||  |||||| ||||  ||||||||||||||| |||||||| ||||| ||||    
T  12862957 aggaccaaattgagacacttaatagttaagggatcaaactgagaaaataaaataagttaagagacc 12863022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 37782039 - 37781953
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||| ||||||| |||||  | ||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  37782039 agataaggaccaaattgaaacatttaatagttaaagaaccaaactgagaaattaaaataatttaagggaccgagggatgtattaagc 37781953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 29344246 - 29344176
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||| |||||||||||| ||||  | |||||||||||||||||||||| ||||||||||    
T  29344246 agataaggaccaaattaaaacgtttaatagttaaggggtcaaactgagaaattaaaataagttaagggacc 29344176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 47537074 - 47537160
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||| ||||||| ||||  || ||||||||||| ||||||||| ||||||||||   |||||||||||||    
T  47537074 agataaggaccaaattgaaacatttaatagttaagggaccaaactgagaagttaaaataagttaagggaccgggggatatattaagc 47537160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 47928464 - 47928555
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaa 104  Q
    ||||||||||||||||||||| ||||||| |||| |||  ||||| |||||||||||||| |||||||||  | |||| |||||||| ||||    
T  47928464 agataaggaccaaattgaaacatttaatagttaagagactaaactaagaaattaaaataagttaagggacggagggatgtattaagcctaaa 47928555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 40881173 - 40881103
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||||||||| |||||| ||||  || || |||||||||||||||||| ||||||||||    
T  40881173 agataaggaccaaattgaaacggttaatagttaagggaccacactgagaaattaaaataagttaagggacc 40881103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 29345112 - 29345176
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaa 77  Q
    |||||| ||||||||| |||| ||||||| ||||  ||||||||||| |||||||||||||||||    
T  29345112 agataatgaccaaattaaaacatttaatagttaagggatcaaactgaaaaattaaaataaattaa 29345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 29408321 - 29408242
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||| ||||||| ||| ||| ||||  ||||||||||||||| ||||||||||||| ||||||| | || ||||||||    
T  29408321 gaccaatttgaaacattttatagttaagggatcaaactgagaaaataaaataaattaaaggaccaacgaatgtattaagc 29408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 4974091 - 4974169
Alignment:
Q  21 accaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||| || |||||||||||| |||| |||||||| ||| || | ||||||||||||||||| ||| ||| ||||||||    
T  4974091 accaatttaaaacgtttaatagttaagagatcaaattgaaaattgaaaataaattaagggactaaatgatctattaagc 4974169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 33071672 - 33071742
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||| ||||||||||| ||||||| ||||   |  |||||||||||||||||||| ||||||||||    
T  33071672 agataaggatcaaattgaaacatttaatagttaaggaactaaactgagaaattaaaataagttaagggacc 33071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 47927461 - 47927391
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||| ||||| ||||||| ||||  ||  |||||||||||||||||||| ||||| ||||    
T  47927461 agataaggaccaaatcgaaacatttaatagttaagggactaaactgagaaattaaaataagttaagagacc 47927391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 35315262 - 35315351
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaattt 108  Q
    |||||||||||| |   |||||||||||  ||||||||||||||| |||||||| |||||||||| | | || |||||||| | ||||||    
T  35315262 ggaccaaattgacatacttaataattaagggatcaaactgagaaaataaaataagttaagggaccgacgaatgtattaagccttaaattt 35315351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 132039 - 132119
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||| || ||  |||||| ||||  || |||||||||||| |||||||| |||||||||| |||||| ||||||||    
T  132039 ggaccaaatcgacacacttaatagttaagggaccaaactgagaaaataaaataagttaagggacctaaggatgtattaagc 132119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 8394058 - 8394023
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaagctt 101  Q
    |||||||||||||||||||||| |||||||||||||    
T  8394058 aaaataaattaagggaccaaagcatatattaagctt 8394023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 13287034 - 13287096
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||||||||||||  |||||| ||||  |||||||  |||||||||||||||| |||||||    
T  13287034 ggaccaaattgaaacacttaatagttaagggatcaaatagagaaattaaaataaactaaggga 13287096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 38408361 - 38408393
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaag 98  Q
    ||||||||||||||||||||| |||||||||||    
T  38408361 aaaataaattaagggaccaaatgatatattaag 38408393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 43808555 - 43808641
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||| |||||||||||||||||||||| ||||  || || |||||||||||||||||| |||||||||| |||||| ||||||||    
T  43808555 agataatgaccaaattgaaacgtttaatagttaagggaccacactgagaaattaaaataagttaagggaccgaaggatgtattaagc 43808641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 21246509 - 21246579
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||| |||| ||||||||||||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  21246509 agataatgaccgaattgaaacgtttaatagttaagggaccaaactgagaaattaaaataagttaagggacc 21246579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 45042684 - 45042598
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaat 106  Q
    |||||| ||||||| ||||| | ||||  ||||||||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||    
T  45042684 gaccaatttgaaacatttaacagttaagggatcaaactgagaaaataaaataaattaaaggaccaacggatgtattaaacttaaaat 45042598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 43807517 - 43807433
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaa 97  Q
    ||||||||||||||||||||| ||||||| ||||  ||  |||||||||||||||||||| |||| |||||  ||||| ||||||    
T  43807517 agataaggaccaaattgaaacatttaatagttaatggactaaactgagaaattaaaataagttaaaggaccggaggatgtattaa 43807433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 40110692 - 40110780
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaatt 107  Q
    |||||||||||| ||  |||||| ||||  ||||||||||||||| |||||||| |||||||| | | |||| |||||||| |||||||    
T  40110692 ggaccaaattgacacacttaatagttaagggatcaaactgagaaaataaaataagttaagggatcgagggatgtattaagcctaaaatt 40110780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 9822733 - 9822651
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatatta 96  Q
    ||||||||||||||||||||||||||||| ||||  || ||||||||  |||| |||||| ||||||||| | ||||| |||||    
T  9822733 agataaggaccaaattgaaacgtttaatagttaagtgaccaaactga-caattgaaataagttaagggacaagaggatgtatta 9822651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 333
Target Start/End: Complemental strand, 25476172 - 25476032
Alignment:
Q  188 ggggaaattacacccacctcccttgagtttcatctaaatgacactgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttca 287  Q
    ||||||||||||  |||||||| |||| || ||  ||||||||||||||||      ||||||||||| ||||| ||||| || |||||| ||||||| |    
T  25476172 ggggaaattacattcacctcccctgaggtttattaaaatgacactgacact------ccctctagttttaaaacttacacgaacctccctcaagttttta 25476079  T
Q  288 tcaattagacaaacaccactcttat-tatttacaccgttaaatttcc 333  Q
    | || || ||||||||| | ||||| |||| |||||||||| |||||    
T  25476078 tgaaataaacaaacacctcccttatctattaacaccgttaattttcc 25476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 30743169 - 30743099
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||| ||||||| ||||  || || | |||||||||||||||| |||| |||||    
T  30743169 agataaggaccaaattgaaacatttaatagttaagggaccacattgagaaattaaaataagttaaaggacc 30743099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 26803260 - 26803320
Alignment:
Q  23 caaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||| ||  |||||| |||| |||||||||||||||| |||||||| ||||||||||    
T  26803260 caaattgacacacttaatagttaagagatcaaactgagaaaataaaataagttaagggacc 26803320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 14169695 - 14169632
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggac 82  Q
    |||||||||||| || ||| ||| ||||| || |||||||||||| |||||||| |||||||||    
T  14169695 ggaccaaattgagacattttatagttaaaggaccaaactgagaaaataaaataagttaagggac 14169632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 40811267 - 40811192
Alignment:
Q  23 caaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaag 98  Q
    |||||||| || ||||||| ||||  ||||||||||||||| || ||||| |||||||||| | |||| |||||||    
T  40811267 caaattgagacatttaatagttaagggatcaaactgagaaaatagaataagttaagggaccgagggatgtattaag 40811192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 22167855 - 22167793
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    |||||||||||||||  |||||| ||||  ||  |||||||||||||||||||| ||||||||    
T  22167855 ggaccaaattgaaacacttaatatttaagggactaaactgagaaattaaaataagttaaggga 22167793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 40779684 - 40779762
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaag 98  Q
    |||||| || |||||||||||||||| | ||  ||| ||| || | ||||||||||||||||||||| ||| |||||||    
T  40779684 gaccaatttaaaacgtttaataattagatgactaaattgaaaactgaaaataaattaagggaccaaacgatgtattaag 40779762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 49619857 - 49619939
Alignment:
Q  17 aaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||| ||| ||||||||||| |||   || |||| ||| || | ||||||||||||||||||||| ||| ||||||||    
T  49619857 aaggaccaatttggaacgtttaatagttaggggaccaaattgaaaactgaaaataaattaagggaccaaatgatgtattaagc 49619939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 51725385 - 51725339
Alignment:
Q  53 aaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||    
T  51725385 aaactgagaaattaaaataagttaagggaccgggggatatattaagc 51725339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 22169289 - 22169322
Alignment:
Q  49 gatcaaactgagaaattaaaataaattaagggac 82  Q
    |||||||||||||||||||||||| |||||||||    
T  22169289 gatcaaactgagaaattaaaataagttaagggac 22169322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 48621919 - 48621866
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagtttt 285  Q
    |||||| |||| ||||| |||||| ||||| |||||||| ||||||||||||||    
T  48621919 tgacaccaacaccccctttagtttaaaaacatacactaacctcccttaagtttt 48621866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24517654 - 24517718
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||| ||  |||| ||||||  ||| ||||||||||| |||||||| ||||||||||    
T  24517654 ggaccaaattgacacacttaaaaattaagggattaaactgagaaaataaaataagttaagggacc 24517718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 38280925 - 38280845
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagct 100  Q
    ||||||||||| ||  |||||| ||||  || |||||||||||| |||||||| |||| |||||  ||||| |||||||||    
T  38280925 gaccaaattgacacaattaatagttaatggaccaaactgagaaaataaaataacttaaaggaccggaggatgtattaagct 38280845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 33553399 - 33553467
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||| ||||||||    
T  33553399 agataaggaccaaattgaaacgtttaatagttaagagaccaaactgaaaaattaaaataagttaaggga 33553467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 20630705 - 20630775
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||| || |||||||    
T  20630705 agataaggaccaaattgaaacgtttaatagttaagggattaaactgagaaattaaaataagtttagggacc 20630775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3532269 - 3532190
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||| ||  |||||||||||  ||||||||||| ||| ||||||||||||||||| || ||||||||||||||    
T  3532269 gaccaaattgacacacttaataattaagggatcaaactgaaaaaataaaataaattaagggatcataggatatattaagc 3532190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 30179586 - 30179653
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggg 80  Q
    |||||| ||||||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||    
T  30179586 agataaagaccaaattaaaacgtttaaaaattaagggaccaaactgagaaattaaaataaattaaggg 30179653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 336
Target Start/End: Original strand, 35063607 - 35063750
Alignment:
Q  188 ggggaaattacacccacctcccttgagtttcatctaaatgacactgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttca 287  Q
    ||||||||||||| ||||||||||||| || ||  ||||| ||||||||||      ||||||||||| ||||| ||||  || |||||||||||||| |    
T  35063607 ggggaaattacactcacctcccttgaggtttattaaaatgtcactgacact------ccctctagttttaaaacttacatgaacctcccttaagttttta 35063700  T
Q  288 tcaattagacaaacaccactcttat-tatttacaccgttaaatttccatt 336  Q
    | || |||||||||| | | ||||| |||| |||| ||||| ||||||||    
T  35063701 tgaaatagacaaacatctcccttatctattaacactgttaattttccatt 35063750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 38356875 - 38356946
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacac 303  Q
    |||||| |||| |||||||||||| ||||| |||| ||| |||||||||||||| ||||| || ||||||||    
T  38356875 tgacacaaacaccccctctagttttaaaacatacattaacctcccttaagttttaatcaaatatacaaacac 38356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 35064467 - 35064386
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacaccactcttatt 313  Q
    |||||||||||||||||||||||| |||||  |||||||  |||||||| || ||||||| |||| ||| ||| | ||||||    
T  35064467 tgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctcccttatt 35064386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 39272244 - 39272309
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaag 78  Q
    |||||| ||||||||| |||||||||||| ||||| || |||||||| ||||| |||||| |||||    
T  39272244 agataatgaccaaattaaaacgtttaatagttaaaggaccaaactgaaaaatttaaataagttaag 39272309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 7490235 - 7490295
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagg 79  Q
    |||||||||||| || ||| ||||||||| || |||||||||||| |||||||| ||||||    
T  7490235 ggaccaaattgagacattttataattaaaggaccaaactgagaaaataaaataagttaagg 7490295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 20921557 - 20921477
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||| ||||||||||||||| |||   || |||| ||| || | |||||||||||| |||||||| ||||||||||||    
T  20921557 ggaccaatttgaaacgtttaatatttaggggaccaaattgaaaattgaaaataaattaaaggaccaaatgatatattaagc 20921477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 15850700 - 15850763
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||| ||| ||| ||||| || |||||| ||||| |||||||| ||||||||||    
T  15850700 gaccaaattgaaacattttatagttaaaggagcaaactaagaaaataaaataagttaagggacc 15850763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 19601541 - 19601587
Alignment:
Q  257 aaaacctacactaatctcccttaagttttcatcaattagacaaacac 303  Q
    ||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  19601541 aaaacttacactaatctcccttaagtttttatcaaatatacaaacac 19601587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 30178627 - 30178557
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||| ||||||| |||||| ||| ||| ||||  || ||| ||||||||||||||||| ||||||||||    
T  30178627 agataacgaccaaactgaaacatttgatagttaagggaccaatctgagaaattaaaataagttaagggacc 30178557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 4701574 - 4701606
Alignment:
Q  66 aaaataaattaagggaccaaaggatatattaag 98  Q
    ||||||||||||||||||||| |||||||||||    
T  4701574 aaaataaattaagggaccaaatgatatattaag 4701606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 40056351 - 40056407
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcat 288  Q
    ||||||||||| ||| |||||||| ||||| |||| ||| |||||||||||| ||||    
T  40056351 tgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 40056407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 47244024 - 47244110
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||||||||||| |||||||| ||||  || || ||||||||||||||||||||||||||| | | |||| ||||||||    
T  47244024 agataaggaccaaattgaaatgtttaatagttaagggaccacactgagaaattaaaataaattaagggatcgagggatgtattaagc 47244110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11482876 - 11482808
Alignment:
Q  15 ataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||| ||||||| ||||  || ||||||||||||||||||||| ||||||||||    
T  11482876 ataaggaccaaattgaaacatttaatagttaagggaccaaactgagaaattaaaataagttaagggacc 11482808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 50498006 - 50498090
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaa 97  Q
    |||||| |||||||||||||||||||||||||||  || || |||||||||||||||||| | ||||||||  ||||| ||||||    
T  50498006 agataatgaccaaattgaaacgtttaataattaagggaccacactgagaaattaaaataagtgaagggaccggaggatgtattaa 50498090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 5417386 - 5417295
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaa 104  Q
    ||||||||| ||||||||||| ||||||| ||||  || |||||||| |||||||||||| ||||||||||||  ||| |||||||| ||||    
T  5417386 agataaggatcaaattgaaacatttaatagttaagggaccaaactgaaaaattaaaataagttaagggaccaagagatgtattaagcctaaa 5417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 26045214 - 26045144
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||| |||||||||||||||||| ||||  || || |||||||||||||||||| ||||||||||    
T  26045214 agataaggactaaattgaaacgtttaatagttaagggaccacactgagaaattaaaataagttaagggacc 26045144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 47573678 - 47573748
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||| |||||||||||| ||||  || || |||||||||||||||||| ||||||||||    
T  47573678 agataaggaccaaattaaaacgtttaatagttaagggaccacactgagaaattaaaataagttaagggacc 47573748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 47243034 - 47242949
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaag 98  Q
    |||||| ||||||||| |||| ||||||| ||||  ||| |||||||||||||||||||| |||||||||||| | || |||||||    
T  47243034 agataaagaccaaattaaaacatttaatagttaagggattaaactgagaaattaaaataagttaagggaccaatgaatgtattaag 47242949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 43708918 - 43708848
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    ||||||||||||||||||||| ||||||| ||||  ||  |||||||||||||||||||| ||||| ||||    
T  43708918 agataaggaccaaattgaaacatttaatagttaatggactaaactgagaaattaaaataagttaagagacc 43708848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 43709908 - 43709978
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||| |||||||||||||||||||||| ||||  ||  | |||||||||||||||||| ||||||||||    
T  43709908 agataaagaccaaattgaaacgtttaatagttaagggactacactgagaaattaaaataagttaagggacc 43709978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 48413585 - 48413671
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||||||||||||||||| ||||   | || |||| ||||||||||||| |||||||| | | |||| ||||||||    
T  48413585 agataaggaccaaattgaaacgtttaatagttaaggaaccacactgggaaattaaaataagttaagggatcgagggatgtattaagc 48413671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 47572668 - 47572600
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaaggga 81  Q
    ||||||||||||||||||||| ||||||| ||||  ||  || ||||||||||||||||| ||||||||    
T  47572668 agataaggaccaaattgaaacatttaatagttaagggactaagctgagaaattaaaataagttaaggga 47572600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 6139072 - 6138993
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||| || ||||||||||||  || |||||||||||| |||||||| |||||||| |  ||||| ||||||||    
T  6139072 gaccaaattgagacatttaataattaagggaccaaactgagaaaataaaataagttaagggatcggaggatgtattaagc 6138993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 17319116 - 17319054
Alignment:
Q  21 accaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||  || ||| |||| ||||||||||||||||||||||||| ||||| ||||    
T  17319116 accaaattgaaacactttatagttaagagatcaaactgagaaattaaaataagttaagagacc 17319054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 50072076 - 50072006
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaaca 302  Q
    ||||||||||| ||||| |||||| ||||| ||||| || |||||||||||| ||||||| || |||||||    
T  50072076 tgacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcatcaaatatacaaaca 50072006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26059819 - 26059888
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggac 82  Q
    |||||||||||||||  |||  ||||||| ||||  ||  ||||||||||||||||||||||||||||||    
T  26059819 agataaggaccaaataaaaatatttaatagttaatggactaaactgagaaattaaaataaattaagggac 26059888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 12007492 - 12007564
Alignment:
Q  232 tgacactaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||||| ||| |||||||||||| ||||| |||| ||| ||| |||||||| ||||||| || |||||||||    
T  12007492 tgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaatacacaaacacc 12007564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 50071286 - 50071353
Alignment:
Q  236 actaacatcccctctagtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacac 303  Q
    ||||||||||| |||||||| ||||   ||||||| |||||||||| ||||||||| || ||||||||    
T  50071286 actaacatcccttctagttttaaaattaacactaacctcccttaagctttcatcaaatacacaaacac 50071353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 42698702 - 42698736
Alignment:
Q  20 gaccaaattgaaacgtttaataattaaaagatcaa 54  Q
    |||||||||||||||||||||||||||| ||||||    
T  42698702 gaccaaattgaaacgtttaataattaaatgatcaa 42698736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 44159159 - 44159097
Alignment:
Q  21 accaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||  |||||| |||| |||||||||||| ||| |||||||| |||| |||||    
T  44159159 accaaattgaaacacttaatagttaagagatcaaactgaaaaaataaaataagttaaaggacc 44159097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 50497077 - 50496991
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||||||| |||| ||||||| ||||   |  |||||||||||||||||||| || ||||||   ||||| ||||||||    
T  50497077 agataaggaccaaattaaaacatttaatagttaaggaactaaactgagaaattaaaataagttgagggactggaggatgtattaagc 50496991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 39631432 - 39631387
Alignment:
Q  240 acatcccctctagtttgaaaacctacactaatctcccttaagtttt 285  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||    
T  39631432 acatcccctctatttttaaaacttacaataatctcccttaagtttt 39631387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 44160483 - 44160536
Alignment:
Q  52 caaactgagaaattaaaataaattaagggaccaaaggatatattaagcttaaaa 105  Q
    |||||||||||| |||||||| ||||||||||  ||||| |||||||| |||||    
T  44160483 caaactgagaaaataaaataagttaagggaccggaggatgtattaagcctaaaa 44160536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 26376405 - 26376325
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||| |||||| ||| |||   ||||||| ||| ||   ||||||| |||||||||||||| |||||||||||    
T  26376405 ggaccaaattgagacgttttatagttaggggatcaaaatgaaaaccaaaaataatttaagggaccaaagcatatattaagc 26376325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 34439700 - 34439780
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    ||||||||||||||| ||| ||| ||||  || || ||||||||| |||||||| |||||||||  | |||| ||||||||    
T  34439700 ggaccaaattgaaacattttatagttaagggaccacactgagaaaataaaataagttaagggactgagggatgtattaagc 34439780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 41348311 - 41348235
Alignment:
Q  23 caaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||| ||  |||||| ||||  ||||||||||||||| |||||||| |||| ||||||  |||| ||||||||    
T  41348311 caaattgacacacttaatagttaagggatcaaactgagaaaataaaataagttaaaggaccaggggatgtattaagc 41348235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 54628470 - 54628514
Alignment:
Q  244 cccctctagtttgaaaacctacactaatctcccttaagttttcat 288  Q
    |||||||||||| |||| | ||||||| |||||||||||||||||    
T  54628470 cccctctagttttaaaatcgacactaacctcccttaagttttcat 54628514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 85110 - 85180
Alignment:
Q  13 agataaggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggacc 83  Q
    |||||||||||||||||||||| |||||| ||||  || || |||||||||||||||||| ||||||||||    
T  85110 agataaggaccaaattgaaacggttaatagttaagggaccacactgagaaattaaaataagttaagggacc 85180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 7855 - 7908
Alignment:
Q  251 agtttgaaaacctacactaatctcccttaagttttcatcaattagacaaacacc 304  Q
    ||||| |||||||||||||||||| |||||||| ||||||| || |||||||||    
T  7855 agttttaaaacctacactaatctctcttaagttctcatcaaatacacaaacacc 7908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 24855 - 24935
Alignment:
Q  19 ggaccaaattgaaacgtttaataattaaaagatcaaactgagaaattaaaataaattaagggaccaaaggatatattaagc 99  Q
    |||||||||||||||  || |||||||   || |||||||| ||   ||||||||||||||||||||| ||| ||||||||    
T  24855 ggaccaaattgaaacactttataattaggggaccaaactgaaaaccaaaaataaattaagggaccaaacgatgtattaagc 24935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University