View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_17 (Length: 325)
Name: NF11900_low_17
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 37248380 - 37248648
Alignment:
| Q |
6 |
accaccaccttcatctcacactatgtttcccatgcatggacgtggtaattataaccgtcgttttcatccatacatgaggcctatacaagagattccaatt |
105 |
Q |
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| T |
37248380 |
accaccaccttcatctcacactatgtttcccatgcatggacgtggtaattataaccgtcgttttcatccatacatgaggcctatacaagagattccaatt |
37248479 |
T |
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| Q |
106 |
ttccctactcgtctttaccataacaatattgatgaatctttagggacagcaatggatcgtctttctttgattgacaagccggctgatcttgctccaactg |
205 |
Q |
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| T |
37248480 |
ttccctactcgtctttaccataacaatattgatgaatctttagggacagcaatggatcgtctttctttgattgacaagccggctgatcttgctccaactg |
37248579 |
T |
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| Q |
206 |
aggaacgaccgatggtgtggggtgatagtatgtttgaaataggaagcaccagcaccagcaacagcaaca |
274 |
Q |
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| T |
37248580 |
aggaacgaccgatggtgtggggtgatagtatgtttgaaataggaagcaccagcaacagcaacaacaaca |
37248648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 37238698 - 37238960
Alignment:
| Q |
12 |
accttcatctcacactatgtttcccatgcatggacgtggtaattataaccgtcgttttcatccatacatgaggcctatacaagagattccaattttccct |
111 |
Q |
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| T |
37238698 |
accttcatctcacactatgtttcccatgcatggacgtggtaattataaccgtcgttttcatccatacatgaggcctatacaagagattccaattttccct |
37238797 |
T |
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| Q |
112 |
actcgtctttaccataacaatattgatgaatctttagggacagcaatggatcgtctttctttgattgacaagccggctgatcttgctccaactgaggaac |
211 |
Q |
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| T |
37238798 |
actcgtctttaccataacaatattgatgaatctttagggacagcaatggatcgtctttctttgattgacaagccggctgatcttgctccaactgaggaac |
37238897 |
T |
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| Q |
212 |
gaccgatggtgtggggtgatagtatgtttgaaataggaagcaccagcaccagcaacagcaaca |
274 |
Q |
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| T |
37238898 |
gaccgatggtgtggggtgatagtatgtttgaaataggaagcaccagcaacagcaacaacaaca |
37238960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 37252605 - 37252706
Alignment:
| Q |
7 |
ccaccaccttcatctcacactatgtt---tcccatgcatggacgtggtaattataaccgtcgttttcatccatacatgaggcctatacaagagattccaa |
103 |
Q |
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| T |
37252605 |
ccaccaccttcatcacacactatgttgtttcctatgcatggaagcggtaattataaccgccgttttcatccatacgtgaggcctataccagaggttccaa |
37252704 |
T |
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| Q |
104 |
tt |
105 |
Q |
| |
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|| |
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| T |
37252705 |
tt |
37252706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 33938319 - 33938347
Alignment:
| Q |
253 |
accagcaccagcaacagcaacagcaacag |
281 |
Q |
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| T |
33938319 |
accagcaccagcaacagcaacagcaacag |
33938347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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