View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_18 (Length: 313)
Name: NF11900_low_18
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 3829937 - 3830144
Alignment:
| Q |
19 |
agcatgattagtgcttggctggtgcgaataaaaaggttaggcgtatacaagacctggagtcccaagacttccgggtttgccacttaattttgcaatacaa |
118 |
Q |
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| T |
3829937 |
agcatgattagtgcttggctggtgcgaataaaaaggttaggcgtatacaagacccggagtcccaagacttccgggtttgccacttaattttgcaatacaa |
3830036 |
T |
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| Q |
119 |
caaaaaattggaacgattgagttagactctccctttgtcggattttttcatgatatacaagaaagtttgattcagccaaggacctactaagaaatcagag |
218 |
Q |
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| T |
3830037 |
caaaaaattggaacgattgagttagactctccctttgtcagattttttcatgatatacaagaaagtttgattcagccaaggatctattaagaaatcagag |
3830136 |
T |
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| Q |
219 |
cttgcatg |
226 |
Q |
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|||||||| |
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| T |
3830137 |
cttgcatg |
3830144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 18690369 - 18690321
Alignment:
| Q |
178 |
agaaagtttgattcagccaaggacctactaagaaatcagagcttgcatg |
226 |
Q |
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| T |
18690369 |
agaaagtttgattcagcccatgacctacggagaaatcaaagcttgcatg |
18690321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 5748272 - 5748326
Alignment:
| Q |
170 |
gatatacaagaaagtttgattcagccaaggacctactaagaaatcagagcttgca |
224 |
Q |
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| T |
5748272 |
gatattcatgaaagtttgattcagaccatgacctacgaagaaatcagagcttgca |
5748326 |
T |
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