View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_19 (Length: 299)
Name: NF11900_low_19
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_19 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 12348 - 12078
Alignment:
| Q |
19 |
acacaaagtggtccactttgtccagtgcaatttcttttaatccattctctgacccccaccagaatctgcaaataatcatttccatttggttacaaatctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12348 |
acacaaagtggtccactttgtccagtgcaatttcttttaatccattctctgacccccaccagaatctgcaaataatcatttccatttggttacaaatctt |
12249 |
T |
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| Q |
119 |
cattggtataaggaaacaactcttcattggtatagcttgagccaactcatcatattctggccaacattctta-taaacatataagctcatacttatacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12248 |
cattggtataaggaaacaactcttcattggtatagcttgagccaactcatcatattctggccaacattcttactaaacatataagctcatacttatacaa |
12149 |
T |
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| Q |
218 |
gttgcctttgcatgccttttatagtctcgagttagtcgttctcgagtctcattctgcatttgcatgccttt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12148 |
gttgcctttgcatgccttttatagtctcgagttagtcgttcttgagtctcattctgcatttgcatgccttt |
12078 |
T |
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