View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_2 (Length: 661)
Name: NF11900_low_2
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 123 - 646
Target Start/End: Complemental strand, 10368546 - 10368023
Alignment:
| Q |
123 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtta |
222 |
Q |
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| T |
10368546 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtta |
10368447 |
T |
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| Q |
223 |
atgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcnnnn |
322 |
Q |
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| T |
10368446 |
atgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcaaaa |
10368347 |
T |
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| Q |
323 |
nnntaaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcattgcttactgatcatgtgcattgattt |
422 |
Q |
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| T |
10368346 |
aaataaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcattgcttactgatcatgtgcattgattt |
10368247 |
T |
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| Q |
423 |
caatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaataa |
522 |
Q |
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| T |
10368246 |
caatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaataa |
10368147 |
T |
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| Q |
523 |
ttttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaagtcgtccatttcaagatacgagatgagggtggtatggattagcatat |
622 |
Q |
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| T |
10368146 |
ttttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaagtcgtccattacaagatacgagatgagggtggtatggattagcatat |
10368047 |
T |
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| Q |
623 |
acatgagatgggaatggttgagat |
646 |
Q |
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| T |
10368046 |
acatgagatgggaatggttgagat |
10368023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 10368660 - 10368608
Alignment:
| Q |
9 |
tgagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
61 |
Q |
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| T |
10368660 |
tgagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
10368608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 36116774 - 36116814
Alignment:
| Q |
12 |
gatgaaggagaagaagaagaatggagttcaaagattcagat |
52 |
Q |
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| T |
36116774 |
gatgaaggagaagaagaataatggagttcaaagattcagat |
36116814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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