View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_21 (Length: 239)
Name: NF11900_low_21
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_21 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23452814 - 23452584
Alignment:
| Q |
1 |
aatttctatctgtctgtttaacttggtatttttaaaactggatttgtaaatgtagnnnnnnnctcattaaaagcacaagcttatatactgtctt-----c |
95 |
Q |
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| T |
23452814 |
aatttctatctgtctgtgtaacttggtatttttaaaactggatttgtaaatgtagtttttttctcattaaaagcacaagcttatatactgtcttttaagc |
23452715 |
T |
|
| Q |
96 |
acataccatcttaacattcacacacgatagttcagaggtgagccagagagagaatcacatgctgtgttgattctatatccagctcaaggatatatcaaca |
195 |
Q |
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| T |
23452714 |
acataccatcttaacattcacacacgatagttcagaggtgagccagagagagaatcacatgctgtgttgattctatatccagctcaaggatatatcaaca |
23452615 |
T |
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| Q |
196 |
---tgtttaaatttaattctatattgcaaag |
223 |
Q |
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| T |
23452614 |
tattgtttaaatttaattctatattgcaaag |
23452584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 23869576 - 23869664
Alignment:
| Q |
133 |
gtgagccagagagagaatcacatgctgtgttgattctatatccagctcaaggatatatcaaca---tgtttaaatttaattctatattg |
218 |
Q |
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| T |
23869576 |
gtgagctagagagaaaatcacatgatgtgatgattctgtgtcaagctcaaggatatatgaatacattgttcaaacttaattctatattg |
23869664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 4258751 - 4258793
Alignment:
| Q |
151 |
cacatgctgtgttgattctatatccagctcaaggatatatcaa |
193 |
Q |
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| T |
4258751 |
cacatgctgtgttgattccatatccagctcaaggccatatcaa |
4258793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 1282986 - 1282944
Alignment:
| Q |
151 |
cacatgctgtgttgattctatatccagctcaaggatatatcaa |
193 |
Q |
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| T |
1282986 |
cacatgctgtgttgattccatatccagctcaaggccatatcaa |
1282944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 1314 - 1269
Alignment:
| Q |
148 |
aatcacatgctgtgttgattctatatccagctcaaggatatatcaa |
193 |
Q |
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| T |
1314 |
aatcacatgctgtgttcattccatatccagctcaaggccatatcaa |
1269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 1676077 - 1676032
Alignment:
| Q |
148 |
aatcacatgctgtgttgattctatatccagctcaaggatatatcaa |
193 |
Q |
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| T |
1676077 |
aatcacatgctgtgttcattccatatccagctcaaggccatatcaa |
1676032 |
T |
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