View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_4 (Length: 651)
Name: NF11900_low_4
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 14 - 651
Target Start/End: Complemental strand, 7037728 - 7037091
Alignment:
| Q |
14 |
cagagacacagttggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagt |
113 |
Q |
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| T |
7037728 |
cagagacacagttggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagt |
7037629 |
T |
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| Q |
114 |
gctcatgtttaaagtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaa |
213 |
Q |
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| T |
7037628 |
gctcatgtttaaagtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaa |
7037529 |
T |
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| Q |
214 |
atggatcttaaaatgcttgaagacaacgtcaatttccatattggcgaatggaagccccactaaggaatttgaaatgggtcttcgattgagacaaggtgat |
313 |
Q |
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| T |
7037528 |
atggatcttaaaatgcttgaagacaacgtcaatttccatattggcgaatggaagccccattaaggaatttgaaacgggtcttcgattgagacaaggtgat |
7037429 |
T |
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| Q |
314 |
cctttgttgccgtttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatg |
413 |
Q |
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| T |
7037428 |
cctttgttgccgtttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatg |
7037329 |
T |
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| Q |
414 |
atgaaggctatgctcgcctacaatacacagattatatgttaatcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttca |
513 |
Q |
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| T |
7037328 |
atgaaggctatgctcgcctacaatacacagattatatgttaatcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttca |
7037229 |
T |
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| Q |
514 |
ccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaattggaagaataatcagttgtccatcggtggttgcat |
613 |
Q |
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| T |
7037228 |
ccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaattggaagaataatcagttgtccatcggtggttgcat |
7037129 |
T |
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| Q |
614 |
ggttattattaaataaggattgtcagctctcctagtct |
651 |
Q |
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| T |
7037128 |
ggttattattaaatcaggattgtcagctctcctagtct |
7037091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 36421241 - 36421201
Alignment:
| Q |
119 |
tgtttaaagtagacttcgaaaaggcgtatgacttagttgat |
159 |
Q |
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| T |
36421241 |
tgtttaaagttgacttcgaaaaggcgtatgattcagttgat |
36421201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 54163994 - 54164030
Alignment:
| Q |
119 |
tgtttaaagtagacttcgaaaaggcgtatgacttagt |
155 |
Q |
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| T |
54163994 |
tgtttaaagttgacttcgaaaaggcgtatgatttagt |
54164030 |
T |
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