View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_6 (Length: 606)
Name: NF11900_low_6
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Original strand, 43063784 - 43064361
Alignment:
| Q |
11 |
tgaggtggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggattt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43063784 |
tgagatggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggattt |
43063883 |
T |
|
| Q |
111 |
gattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaa-ttatgaacaaaatgatttttgctcattgattgtaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43063884 |
gattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaaattatgaacaaaatgatttttgctcattgattgtaaat |
43063983 |
T |
|
| Q |
210 |
gatctatttacaacaaattgatgagggaaaaatatagctagagattaactaaccgttacaagaagagatttgggccaaatatgagtattgtgcaagggtt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43063984 |
gatctatttacaacaaattgatgagggaaaaatatagttagagattaactaaccgttacaagaagagatttggaccaaatatgagtattgtgcaagggtt |
43064083 |
T |
|
| Q |
310 |
gttataagaaaataacatgatgattgatctttaagcaccaagtggtgcatgaggttgctctcatgcacccaccaaattaactacaatcaactgctgttcg |
409 |
Q |
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|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
43064084 |
gttataagaaaataacatgaccattgatcgttaggcaccaagtggtgcatgaggttgctctcatgcacccacca----aactacaattaactgttgttca |
43064179 |
T |
|
| Q |
410 |
gcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaactttcaacttttcttgggta-c |
508 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| | |
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| T |
43064180 |
gcatttttgagatcggttgcgacactctttaaattggttcatccgatttaaaaagtgcatcaaacggtagttaattaactttcaactttttttgggtacc |
43064279 |
T |
|
| Q |
509 |
tacagaacaattgtagaataatataattgcctccattgacaaacttccaatggcatatagttcaagctgcaagtacataact |
590 |
Q |
| |
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| T |
43064280 |
tacagaacaattgtaaaataatataattgcctccattgacaaacttccaatggcataaagttcaagctgcaagtacataact |
43064361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 43182541 - 43182324
Alignment:
| Q |
18 |
gaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggatttgattaac |
117 |
Q |
| |
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||||||||| | |||||||| |||| | || |||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
43182541 |
gaagacagcaagtaatccaatatacaaacatgctgttacatcgttcccataaatcgaacttaacatcatcttagttacatggttgaaggatttgattaac |
43182442 |
T |
|
| Q |
118 |
aaaaaggcatgaatgtggaa----gcataaaatgatgcgc-------ttaataccatatagag-aaattatgaacaaaatgatttttgctcattgattgt |
205 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||| ||||| | ||||| || | ||||||||||| |
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| T |
43182441 |
aaaaaggcttgaatgtggaagcatgcataaaatgatgcgcctaatggctaataccatatagagaaaatgatgaatagaatgaattgagttcattgattgt |
43182342 |
T |
|
| Q |
206 |
aaatgatctatttacaac |
223 |
Q |
| |
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|||||||||| ||||||| |
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| T |
43182341 |
aaatgatctagttacaac |
43182324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 43180341 - 43180194
Alignment:
| Q |
19 |
aagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggatttgattaaca |
118 |
Q |
| |
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||||| ||||||||| |||||| |||| | || |||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43180341 |
aagactgcgattaattcaagatgccactatgccattacatcgttctcaagaattgaacttaacatcatcttagctccatggtggaaggatttgattaaca |
43180242 |
T |
|
| Q |
119 |
aaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatata |
166 |
Q |
| |
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||||||||||||| |||| | ||||||||||| ||||||||||| |
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| T |
43180241 |
gaaaggcatgaatgcagaagtgtgaaatgatgcgccgaataccatata |
43180194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 558
Target Start/End: Complemental strand, 43182083 - 43181916
Alignment:
| Q |
392 |
acaatcaactgctgttcggcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaacttt |
491 |
Q |
| |
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||||| |||| | ||||| |||||||||||| ||||| ||| | ||||||| |||||| ||||||| ||||||| || ||| ||||||||||| | || |
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| T |
43182083 |
acaattaactaccgttcgacatttttgagattggttgaaacattttttaaatcggttcatccgattttaaaagtgtgtcgaacggtagttaactaccgtt |
43181984 |
T |
|
| Q |
492 |
caacttttcttgggt-actacagaacaattgtagaataatataattgcctccattgacaaacttccaa |
558 |
Q |
| |
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|| ||||||||||| ||| || || |||| ||||| |||||| |||||||||| ||||||||| |
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| T |
43181983 |
taatttttcttgggtgcctaaagtgcagttgtcaaataacataatttcctccattgaataacttccaa |
43181916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 43182303 - 43182256
Alignment:
| Q |
217 |
ttacaacaaattgatgagggaaaaatatagctagagattaactaaccg |
264 |
Q |
| |
|
|||||||||||||| ||| |||||||| || ||||||||||||||||| |
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| T |
43182303 |
ttacaacaaattgaagagtgaaaaatacagttagagattaactaaccg |
43182256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 31455350 - 31455402
Alignment:
| Q |
414 |
ttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtg |
466 |
Q |
| |
|
||||||||||| ||| |||| | ||||||| |||||||||||||||||||||| |
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| T |
31455350 |
ttttgagatcgattgagacaatttttaaatcggttcacccgatttaaaaagtg |
31455402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 23912449 - 23912491
Alignment:
| Q |
311 |
ttataagaaaataacatgatgattgatctttaagcaccaagtg |
353 |
Q |
| |
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|||||||||||||||||||| |||| |||||| |||||||||| |
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|
| T |
23912449 |
ttataagaaaataacatgattattgctctttaggcaccaagtg |
23912491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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