View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11900_low_7 (Length: 585)
Name: NF11900_low_7
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 4 - 569
Target Start/End: Complemental strand, 39952864 - 39952299
Alignment:
| Q |
4 |
ggagaagcaaagggttgcggtgttggtttccaaagccgcatttcaatttatacaaggcaagattcataagaatcattctaaaaggtttactttatgagtc |
103 |
Q |
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| T |
39952864 |
ggagaagctaagggttgcggtgttggtttccaaagccgcatttcaatttatacaaggcaagattcataagaatcattctaaaaggtttactttatgaatc |
39952765 |
T |
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| Q |
104 |
aatttgtttactctaattgattttacaccctgcaggtgttcaaccgagcgactacgttgtaccagatgatgttaaagctgcaggtttccaaatctgtgct |
203 |
Q |
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| T |
39952764 |
aatttgtttactctaattgattttacaccctgcaggtgttcaaccgagcgactacgttgtaccagatgatgttaaagctgcaggtttccaaatctgtgct |
39952665 |
T |
|
| Q |
204 |
gaagaattggggtctattgtggaaggccacgatgtaaagaaactcaagtttcatggtggagttgatggcattgcagaaaagatttcaacatcaaccacca |
303 |
Q |
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| T |
39952664 |
gaagaattggggtctattgtggaaggccacgatgtaaagaaactcaagtttcatggtggagttgatggcattgcagaaaagatttcaacatcaaccacca |
39952565 |
T |
|
| Q |
304 |
cgggactaggtggcgattctgaatcgcgacataggagacaagagctttttggcatcaacaaatttgccgaaactgaacttcgaagcttctggatttatgt |
403 |
Q |
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| T |
39952564 |
cgggactaggtggcgattctgaatcgcgacataggagacaagagctttttggcatcaacaaatttgccgaaactgaacttcgaagcttctggatttatgt |
39952465 |
T |
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| Q |
404 |
ttatgaagctcttcaagacatgaccctcatgatccttggagtgtgtgcttttgtttctctgatagtgggcgtattgactgaaggatggccgaaaggagct |
503 |
Q |
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| T |
39952464 |
ttatgaagctcttcaagacatgaccctcatgatccttggagtgtgtgcttttgtttctctgatagtgggcgtattgactgaaggatggccgaaaggagct |
39952365 |
T |
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| Q |
504 |
catgatggtcttggaatagttgcaagtatcttacttgttgtctttgtgacagcaacaagtgattat |
569 |
Q |
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| T |
39952364 |
catgatggtcttggaatagttgcaagtatcttacttgttgtctttgtgacagcaacaagtgattat |
39952299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 386 - 569
Target Start/End: Original strand, 5418290 - 5418473
Alignment:
| Q |
386 |
aagcttctggatttatgtttatgaagctcttcaagacatgaccctcatgatccttggagtgtgtgcttttgtttctctgatagtgggcgtattgactgaa |
485 |
Q |
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| T |
5418290 |
aagcttctgggtttttgtttgggaagcacttcaagacatgactctcatgatacttggagtgtgtgctcttgtgtctctgatagttggcattgcaactgaa |
5418389 |
T |
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| Q |
486 |
ggatggccgaaaggagctcatgatggtcttggaatagttgcaagtatcttacttgttgtctttgtgacagcaacaagtgattat |
569 |
Q |
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| T |
5418390 |
ggatggcctaagggtgctcatgatggtcttgggattgttgccagtatcttattggtcgtctttgtgacagcaacaagtgattat |
5418473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 5418078 - 5418200
Alignment:
| Q |
174 |
gttaaagctgcaggtttccaaatctgtgctgaagaattggggtctattgtggaaggccacgatgtaaagaaactcaagtttcatggtggagttgatggca |
273 |
Q |
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||||||| |||||| || |||||||||| ||| ||||| ||||||||||| |||||||| ||||| ||||| | || | ||||||| ||||||||| |
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| T |
5418078 |
gttaaagatgcaggatttcaaatctgtggtgatgaattagggtctattgttgaaggccatgatgtgaagaagttgaaatatcatggtaagattgatggca |
5418177 |
T |
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| Q |
274 |
ttgcagaaaagatttcaacatca |
296 |
Q |
| |
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|||||||||| |||| |||||| |
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| T |
5418178 |
ttgcagaaaaactttctacatca |
5418200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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