View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11900_low_9 (Length: 548)
Name: NF11900_low_9
Description: NF11900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11900_low_9 |
 | |
|
| [»] scaffold0082 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 22 - 536
Target Start/End: Original strand, 38608301 - 38608815
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608301 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
38608400 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608401 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
38608500 |
T |
|
| Q |
222 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608501 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
38608600 |
T |
|
| Q |
322 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
38608601 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctca |
38608700 |
T |
|
| Q |
422 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatga |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38608701 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatga |
38608800 |
T |
|
| Q |
522 |
tctttctatattctc |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38608801 |
tctttctatattctc |
38608815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 22 - 536
Target Start/End: Original strand, 38793084 - 38793598
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793084 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
38793183 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793184 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
38793283 |
T |
|
| Q |
222 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793284 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
38793383 |
T |
|
| Q |
322 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
38793384 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctca |
38793483 |
T |
|
| Q |
422 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatga |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38793484 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatga |
38793583 |
T |
|
| Q |
522 |
tctttctatattctc |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38793584 |
tctttctatattctc |
38793598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 536
Target Start/End: Complemental strand, 38121822 - 38121308
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
38121822 |
ccgaatctccttcgtgaacacatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggcc |
38121723 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
221 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38121722 |
gttgcgtaaccgtcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatct |
38121623 |
T |
|
| Q |
222 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
38121622 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctaagctttctccgttttcttgcgacgttgagagaatgagttctctctccttt |
38121523 |
T |
|
| Q |
322 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctca |
421 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
38121522 |
ccgtttcatcctgatcaccgttccggtgctcatgttcacactcccggcgccaccgtgctccctgctattatgcgcctcatgctacgagatgcaatggtaa |
38121423 |
T |
|
| Q |
422 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatga |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
38121422 |
ggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatga |
38121323 |
T |
|
| Q |
522 |
tctttctatattctc |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38121322 |
tctttctatattctc |
38121308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 22 - 536
Target Start/End: Complemental strand, 28731396 - 28730882
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
28731396 |
ccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggcc |
28731297 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatct |
221 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
28731296 |
gttgcgtaactgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatct |
28731197 |
T |
|
| Q |
222 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctccttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28731196 |
attcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcgacgttgagagaatgacttcactctccttt |
28731097 |
T |
|
| Q |
322 |
ccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctca |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | | ||||| |
|
|
| T |
28731096 |
ccgtttcatcctgatcaccgttccagtgctcatgttcacactcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacaacgctca |
28730997 |
T |
|
| Q |
422 |
ggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatga |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28730996 |
ggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgttgatga |
28730897 |
T |
|
| Q |
522 |
tctttctatattctc |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28730896 |
tctttctatattctc |
28730882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 34875870 - 34876008
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34875870 |
ccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggcc |
34875969 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaaca |
160 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
34875970 |
gttgcgtaaccatcacttccgagtcgattcatccgaaca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 31529350 - 31529212
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
31529350 |
ccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggcc |
31529251 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaaca |
160 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
31529250 |
gttgcgtaaccgtcacttccgagtcgattcatccgaaca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 51801418 - 51801280
Alignment:
| Q |
22 |
ccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| ||| | || | || ||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
51801418 |
ccgaatctcctccgtgaacacatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggcc |
51801319 |
T |
|
| Q |
122 |
gttgcataaccgtcacttccgattcgattcattcgaaca |
160 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
51801318 |
gttgcgtaatcgtcacttccgattcgattcatccgaaca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 34165 - 34038
Alignment:
| Q |
211 |
caaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgactt |
310 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| ||||| | || |||||||||| ||| ||||| ||||| ||||| | |
|
|
| T |
34165 |
caacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctctccgctctctccgttttattgcgacgtggagaggatgacct |
34066 |
T |
|
| Q |
311 |
cactctcctttccgtttcatcctgatca |
338 |
Q |
| |
|
| ||||| || ||||| ||||| ||||| |
|
|
| T |
34065 |
cgctctcgttcccgttccatccagatca |
34038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 482
Target Start/End: Complemental strand, 33997 - 33897
Alignment:
| Q |
382 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
481 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| |||||| |||||||||| || || ||||||||||| |||| || |||||||| || ||||| |||| |
|
|
| T |
33997 |
cctgctataatgcgcctgatgctcagagatgccatgctccggctccgtaacaatggcttcagcatcctagccctcgctatgaaggtgaagtacgccgagc |
33898 |
T |
|
| Q |
482 |
t |
482 |
Q |
| |
|
| |
|
|
| T |
33897 |
t |
33897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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