View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11901_high_10 (Length: 524)
Name: NF11901_high_10
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 8043023 - 8043359
Alignment:
| Q |
15 |
cataggatagaatcaaaattacaaaacacaattatctcccttcacttgacaaaccaaacataatgttttctcaaagagaaatgccttcaccatctacaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043023 |
cataggatagaatcaaaattacaaaacacaattatctcccttcacttgagaaaccaaacataatgttttctcaaagagaaatgccttcaccatctacaat |
8043122 |
T |
|
| Q |
115 |
tttctcagcttatgcatccatgacagcttccatcatgctgcttcgttccatggcacaagaactcatccctcaaccaattcgtggctacctttacaacacc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043123 |
tttctcagcttatgcatccatgacagcttccatcatgctgcttcgttccatggcacaagaactcatccctcaaccaattcgtggctacctttacaacacc |
8043222 |
T |
|
| Q |
215 |
ttccgctacctcattaaaccacgttcccctacactcacactcatcatagaagaatcaacaggcataacacgtaaccaagtttatgatgcagctgagtctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043223 |
ttccgctacctcattaaaccacgttcccctacactcacactcatcatagaagaatcaacaggcataacacgtaaccaagtttatgatgcagctgagtctt |
8043322 |
T |
|
| Q |
315 |
atctctcaactaaagtcacccctgaaaatgaaagact |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043323 |
atctctcaactaaagtcacccctgaaaatgaaagact |
8043359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 413 - 508
Target Start/End: Original strand, 8043421 - 8043516
Alignment:
| Q |
413 |
ttaaccgatatttacaatggttttcctctcaaatggagattcatttgtgctgaaactgagaaaaacagtgcaaatgatatgcacaacaataataac |
508 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043421 |
ttaaccgatatttacaacggttttcctctcaaatggagattcatttgtgctgaaactgagaaaaacagtgcaaatgatatgcacaacaataataac |
8043516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University