View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_high_12 (Length: 505)

Name: NF11901_high_12
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_high_12
NF11901_high_12
[»] chr6 (7 HSPs)
chr6 (185-488)||(2130072-2130373)
chr6 (11-118)||(2130439-2130546)
chr6 (19-110)||(3855691-3855781)
chr6 (15-105)||(32871712-32871803)
chr6 (26-105)||(6784662-6784741)
chr6 (11-79)||(28867239-28867307)
chr6 (26-105)||(34713570-34713649)
[»] chr1 (12 HSPs)
chr1 (15-105)||(35413084-35413174)
chr1 (11-105)||(29657418-29657512)
chr1 (15-87)||(10061650-10061722)
chr1 (26-85)||(26470013-26470072)
chr1 (15-104)||(35149625-35149714)
chr1 (15-76)||(43537134-43537195)
chr1 (27-70)||(21540144-21540187)
chr1 (15-104)||(9113421-9113511)
chr1 (16-66)||(23906605-23906655)
chr1 (448-483)||(10586545-10586580)
chr1 (39-104)||(49401982-49402047)
chr1 (11-55)||(4684522-4684566)
[»] chr2 (14 HSPs)
chr2 (11-102)||(13716673-13716764)
chr2 (17-105)||(20143028-20143116)
chr2 (11-105)||(3167950-3168043)
chr2 (15-101)||(27007227-27007313)
chr2 (15-104)||(19945685-19945774)
chr2 (26-105)||(14131225-14131304)
chr2 (26-105)||(31264827-31264906)
chr2 (16-88)||(31845473-31845545)
chr2 (11-75)||(38320190-38320254)
chr2 (28-105)||(32975980-32976057)
chr2 (11-72)||(37714477-37714538)
chr2 (11-75)||(35457454-35457518)
chr2 (19-87)||(31645075-31645143)
chr2 (29-110)||(37899468-37899549)
[»] chr4 (9 HSPs)
chr4 (15-104)||(42504155-42504244)
chr4 (11-105)||(37762861-37762955)
chr4 (26-87)||(30220768-30220829)
chr4 (26-105)||(5288591-5288670)
chr4 (26-105)||(16528635-16528714)
chr4 (41-87)||(19482797-19482843)
chr4 (39-104)||(19663274-19663339)
chr4 (15-105)||(19663344-19663430)
chr4 (26-75)||(24060645-24060694)
[»] chr3 (9 HSPs)
chr3 (15-104)||(18271924-18272013)
chr3 (11-110)||(1632862-1632961)
chr3 (15-87)||(26443007-26443079)
chr3 (11-105)||(34905900-34905994)
chr3 (14-87)||(2671960-2672033)
chr3 (15-105)||(45852894-45852984)
chr3 (20-105)||(31192122-31192207)
chr3 (39-85)||(10593441-10593487)
chr3 (11-81)||(40840633-40840702)
[»] chr7 (10 HSPs)
chr7 (26-105)||(20125659-20125738)
chr7 (15-105)||(46413703-46413793)
chr7 (11-86)||(22631534-22631609)
chr7 (28-111)||(23611704-23611787)
chr7 (15-105)||(8123749-8123839)
chr7 (15-75)||(21882759-21882819)
chr7 (28-79)||(1985077-1985128)
chr7 (15-81)||(19511468-19511534)
chr7 (15-66)||(44601058-44601109)
chr7 (27-63)||(23730507-23730543)
[»] scaffold0194 (1 HSPs)
scaffold0194 (27-105)||(27069-27147)
[»] chr8 (6 HSPs)
chr8 (11-105)||(38585048-38585142)
chr8 (20-108)||(25124433-25124521)
chr8 (17-105)||(5718407-5718495)
chr8 (26-87)||(33543416-33543477)
chr8 (15-79)||(5686276-5686340)
chr8 (17-85)||(29414442-29414510)
[»] chr5 (10 HSPs)
chr5 (15-87)||(3040238-3040310)
chr5 (11-105)||(20359967-20360061)
chr5 (15-87)||(30700848-30700920)
chr5 (15-104)||(30735282-30735371)
chr5 (26-105)||(30071840-30071919)
chr5 (11-104)||(25493873-25493966)
chr5 (15-105)||(40519236-40519326)
chr5 (28-105)||(34280066-34280143)
chr5 (38-82)||(9666899-9666943)
chr5 (66-105)||(24402154-24402193)
[»] scaffold0247 (1 HSPs)
scaffold0247 (11-105)||(19244-19338)
[»] scaffold0004 (1 HSPs)
scaffold0004 (447-479)||(227575-227607)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 185 - 488
Target Start/End: Complemental strand, 2130373 - 2130072
Alignment:
Q  185 caataaatattttataattgtgtgagactctacaaaaatttggttcagtaggctgatacgcaatgtcgagtggtatggttcaaagatatcattgtaaata 284  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||    
T  2130373 caataaatattttatagttgtgtgagactctacaaaaatttggttcagtaggctcatacgcaatgtcaagtggtacggttcaaggatatcattgtaaata 2130274  T
Q  285 tgtactaaa-taatgttagcaacaatatcttttgaaagttttcgcaagtttgtagttacaaattcttnnnnnnnnnnntaagaaaataaactaagcgatt 383  Q
    || |||| | ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||           ||||||||||||||||| ||||    
T  2130273 tgcactagagtaatgttagcaacaatatcttttgaaagttttcgccaatttgttgttacaaattcttaaaaaaaa---taagaaaataaactaagtgatt 2130177  T
Q  384 caaatgctaagcagttttgaatagcttctcttaaaattaactttctgtaactaataaattacaaaaagtgattttcattttgataaacaaacacaaaaca 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2130176 caaatgctaagcagttttgaatagcttctcttaaaattaactttctgtaactaataaattacaaaaagtgattttcattttgataaacaaacacaaaaca 2130077  T
Q  484 caaaa 488  Q
    |||||    
T  2130076 caaaa 2130072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 2130546 - 2130439
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgcata 110  Q
    |||||||||| ||  ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2130546 caaaggaggtgattgtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgataaattttatgattatatctatcatttcgcata 2130447  T
Q  111 tttaaaat 118  Q
    ||||||||    
T  2130446 tttaaaat 2130439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 3855781 - 3855691
Alignment:
Q  19 gtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgcata 110  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||    
T  3855781 gtaataatgtgtaattaaggaaaggtgttagcaa-tacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccata 3855691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 32871803 - 32871712
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtctt-gaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||| ||||||||||| ||||  |||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  32871803 ggaggtaatagtgtgtaattaaggaaaaatgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttc 32871712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 6784741 - 6784662
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||  ||||||||||||||||||||| ||| ||||||||||||||  ||||||| | |||||||||||||||    
T  6784741 tgtgtaattaagaaaaggtgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttc 6784662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 28867239 - 28867307
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgata 79  Q
    |||||||||||||| | ||||||||| |||| || |||||||||||| |||||||||||||||||||||    
T  28867239 caaaggaggtaatagtatgtaattaaggaaatgttttagcaaatacattgtcttgaaattttcttgata 28867307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 34713570 - 34713649
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||| ||||  |||||||||| |||||||||| |||| |||||||||||||||||||||| | | |||||||||||||    
T  34713570 tgtgtatttaagaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttc 34713649  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 35413084 - 35413174
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  35413084 ggaggtaatagtgtgtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttc 35413174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 29657418 - 29657512
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  29657418 caaaggaggtaatgatatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttc 29657512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 10061650 - 10061722
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    ||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10061650 ggaggtaatgatgtgtaattaaggaaatgtgttagcaaataaactgtcttgaaattttcttgataaattttgt 10061722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 26470013 - 26470072
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaatttt 85  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  26470013 tgtgtaattaaggaaaggtgttagcaaatacactgttttaaaattttcttgataaatttt 26470072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 35149714 - 35149625
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||| |||| |||| ||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| | | || |||||||||    
T  35149714 ggagataatgatgtataattaaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 43537195 - 43537134
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttg 76  Q
    |||||||||  |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43537195 ggaggtaatggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 21540144 - 21540187
Alignment:
Q  27 gtgtaattaaagaaaggtgttagcaaatacactgtcttgaaatt 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  21540144 gtgtaattaaagaaaggtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 9113511 - 9113421
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaa-tacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    ||||||||| || ||||||||| ||||||| |||||||| |||||| |||| |||||||||||||| ||||| | | | ||||||||||||    
T  9113511 ggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgatatattttatcactgtatctatcattt 9113421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 23906655 - 23906605
Alignment:
Q  16 gaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttga 66  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  23906655 gaggtaatggtgtgtaattaaagaaaggtgttagcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 10586545 - 10586580
Alignment:
Q  448 aaagtgattttcattttgataaacaaacacaaaaca 483  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10586545 aaagtaattttcattttgataaacaaacacaaaaca 10586580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 49401982 - 49402047
Alignment:
Q  39 aaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||| |||||||||||||| ||  ||||||| || |||||||||||||| | | ||||||||||||    
T  49401982 aaagatgttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 4684522 - 4684566
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaata 55  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||    
T  4684522 caaaggagataatggtgtgtaattaaggaaaggtgttagcaaata 4684566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 13716764 - 13716673
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcat 102  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||    
T  13716764 caaaggaggtaatagtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 20143028 - 20143116
Alignment:
Q  17 aggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| | | |||||||||||||    
T  20143028 aggtaatgatgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttc 20143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 3167950 - 3168043
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| ||| | |  |||||||||||||||||||||| | | |||||||||||||    
T  3167950 caaagaaggtaatgatgtgtaattaaagaaaggtgttagcaaatatactatttaaaaattttcttgataaattttgtcact-tatctatcatttc 3168043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 27007227 - 27007313
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatca 101  Q
    |||||||||| |||||| |||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| | | |||||||||    
T  27007227 ggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 19945774 - 19945685
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||||||||  ||||||||||| ||||| | ||| ||||||||||||||| |||||||||||||||||||||| | | ||||||||||||    
T  19945774 ggaggtaatggtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattt 19945685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 14131225 - 14131304
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||||| |||| ||||||||||||||||| |||| |||||||||| ||||||||||| | | |||||||||||||    
T  14131225 tgtgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttcataaattttgtcactgtatctatcatttc 14131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 31264827 - 31264906
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||||| |||| ||||||||||||||||| |||| ||||||  |||||||||||||| | | |||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttc 31264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31845473 - 31845545
Alignment:
Q  16 gaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtg 88  Q
    ||||||||  ||||||||||| | ||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  31845473 gaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttgtg 31845545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 38320254 - 38320190
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttctt 75  Q
    ||||||||||||| |||||||| ||| |||| |||||| ||||||||||||||| ||||||||||    
T  38320254 caaaggaggtaatgatgtgtaaataaggaaatgtgttatcaaatacactgtcttaaaattttctt 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 32976057 - 32975980
Alignment:
Q  28 tgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||  ||||||||||| ||||||||||| ||||||||||||||||| || ||||   | |||||||||||||    
T  32976057 tgtaattaagaaaaggtgttagtaaatacactgttttgaaattttcttgatacatattgtcgatgtatctatcatttc 32975980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 37714477 - 37714538
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaatttt 72  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  37714477 caaaggagataatggtgtgtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 35457454 - 35457518
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttctt 75  Q
    |||||||||||||  ||||||||||| |||| |||||| |||||| ||| |||| ||||||||||    
T  35457454 caaaggaggtaatggtgtgtaattaaggaaatgtgttaacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 31645143 - 31645075
Alignment:
Q  19 gtaataatgtgtaattaaagaaagg-tgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    ||||| ||||||||||||  ||||| |||||||||||||| | |||| |||||||| |||||||||||||    
T  31645143 gtaatgatgtgtaattaagaaaagggtgttagcaaatacattctcttaaaattttc-tgataaattttgt 31645075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 37899549 - 37899468
Alignment:
Q  29 gtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgcata 110  Q
    |||||||  |||| ||||||| ||||||| |||||  ||| |||||||||| ||||||| | | ||||||||||||| ||||    
T  37899549 gtaattatggaaatgtgttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttcccata 37899468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 42504244 - 42504155
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  42504244 ggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgatacattttgtcattgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 37762861 - 37762955
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||  |||| |||||||||||| |||| |||||| |||||||| |||||||||||||| |||||||||||||| | | |||||||||||||    
T  37762861 caaaggaaataatgatgtgtaattaaggaaaagtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcatttc 37762955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 30220768 - 30220829
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  30220768 tgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgatacattttgt 30220829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 5288591 - 5288670
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||| ||| ||||||||||||| || ||||||||| |||||||||| | ||||| | | |||||||||||||    
T  5288591 tgtgtaattaaaaaaatgtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttc 5288670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 16528635 - 16528714
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||||||| |||||| |||||||||| |||| |||||||||||||| || ||||   | |||||||||||||    
T  16528635 tgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgatacatgttgtcgctgtatctatcatttc 16528714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 19482797 - 19482843
Alignment:
Q  41 aggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  19482797 aggtgttaacaaataaactgtcttgaaattttcttgataaattttgt 19482843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 19663339 - 19663274
Alignment:
Q  39 aaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||||||||| ||||||||||||||||| ||||| || ||||||||||| | | ||||||||||||    
T  19663339 aaaggtgttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 19663344 - 19663430
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||| ||||||||||||  ||||||     |||||||||| |||| |||||||||||||||||||||| | | |||||||||||||    
T  19663344 ggaggtaatgatgtgtaattaagaaaaggta----caaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttc 19663430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 24060645 - 24060694
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttctt 75  Q
    ||||||||||| |||| ||||||||||||||||||| || ||||||||||    
T  24060645 tgtgtaattaaggaaatgtgttagcaaatacactgttttaaaattttctt 24060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 18272013 - 18271924
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||||||||  ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| | ||||||||||||||    
T  18272013 ggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaaattttcttgataaattttgtcactatatctatcattt 18271924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 1632862 - 1632961
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgcata 110  Q
    |||||||||||||  |||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||| | | ||||||||||||| ||||    
T  1632862 caaaggaggtaatggtgtgtaattaaagaaacgtgttaacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttcccata 1632961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 26443007 - 26443079
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    |||||||||  |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26443007 ggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtcttgaaattttcttgataaattttgt 26443079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 34905900 - 34905994
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||  || ||||||| |||||    
T  34905900 caaaggaggtaatgatgtataattaaggaaaggtgttagcaaatacactgtcttaaaattttctcgatacagtttgttgttgtatctataatttc 34905994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 2671960 - 2672033
Alignment:
Q  14 aggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    ||||| |||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||| |||||||    
T  2671960 aggagataatgatgtgtaattaaggaaagatgttaacaaatacactgtcttaaaattttcttgatacattttgt 2672033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 45852984 - 45852894
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||| |||| || |||||||||  |||||||||||||||||||| ||||| |||||||||||||| | ||||| | | |||||||||||||    
T  45852984 ggagataatgatatgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttc 45852894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 31192122 - 31192207
Alignment:
Q  20 taataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||| ||||||||||| ||||| | ||||||||||| ||||||| |||||||||||||| | ||| | | | |||||||||||||    
T  31192122 taatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttcttgatacagtttatcactgtatctatcatttc 31192207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 10593487 - 10593441
Alignment:
Q  39 aaaggtgttagcaaatacactgtcttgaaattttcttgataaatttt 85  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||||    
T  10593487 aaaggtgttaacaaatacactatcttaaaattttcttgataaatttt 10593441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 40840702 - 40840633
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaa 81  Q
    ||||||||||||| |||| |||| ||||||||  |||| |  ||||||| |||||||||||||||||||||    
T  40840702 caaaggaggtaatgatgtataatcaaagaaaga-gttaacctatacactctcttgaaattttcttgataaa 40840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 20125659 - 20125738
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||    
T  20125659 tgtgtaattaaagaaaggtattagcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttc 20125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 46413793 - 46413703
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| | | |||||||||||||    
T  46413793 ggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttgaaatttttttaataaattttgtcaatgtatctatcatttc 46413703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 22631534 - 22631609
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttg 86  Q
    |||||||| ||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  22631534 caaaggagataatagtgtgtaattaaggaaaggtgttagctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 23611787 - 23611704
Alignment:
Q  28 tgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgcatat 111  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| |||||    
T  23611787 tgtaattaagtaaaggtgttaacaaatacactgttttgaaattttcttgataaattttatcattgtatctatcatttcccatat 23611704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 8123749 - 8123839
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||| ||||||||| |||||||||||||||||||||||||| || ||| | ||||||||| |||| ||||||| | |||||||||||||||    
T  8123749 ggagataataatgtataattaaagaaaggtgttagcaaatataccgtcctaaaattttctggatacattttgttactatatctatcatttc 8123839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 21882819 - 21882759
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttctt 75  Q
    |||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  21882819 ggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 1985077 - 1985128
Alignment:
Q  28 tgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgata 79  Q
    ||||||||| |||| ||||||||||||||||| |||| ||||||||||||||    
T  1985077 tgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttgata 1985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 19511468 - 19511534
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaa 81  Q
    |||| ||||| || |||||||| |||||||||||  ||||||||||||| |||||||| ||||||||    
T  19511468 ggagataatagtgagtaattaaggaaaggtgttaataaatacactgtctcgaaatttttttgataaa 19511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 44601058 - 44601109
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttga 66  Q
    |||| |||| ||||||||||||  ||| ||||||||||||||||||||||||    
T  44601058 ggagataatgatgtgtaattaagaaaatgtgttagcaaatacactgtcttga 44601109  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 23730543 - 23730507
Alignment:
Q  27 gtgtaattaaagaaaggtgttagcaaatacactgtct 63  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  23730543 gtgtaattaaggaaaggtgttaacaaatacactgtct 23730507  T

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Target: scaffold0194 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 27147 - 27069
Alignment:
Q  27 gtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  27147 gtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 27069  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 38585142 - 38585048
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||| |||  ||||||||||||    
T  38585142 caaaggaggtaattgtgtgtaattaaagaaaagtgttagcaaatacattgctttgaaattttcttgataaattttgtcattggatctatcatttc 38585048  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 25124433 - 25124521
Alignment:
Q  20 taataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttcgca 108  Q
    |||| ||||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  25124433 taatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcgca 25124521  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 5718495 - 5718407
Alignment:
Q  17 aggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||  ||||||||||| |||| |||||||||||||||||||||| |||||||||||||| | ||||| ||| |||||||||||||    
T  5718495 aggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttcttgatatagtttgtcattgtatctatcatttc 5718407  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 33543416 - 33543477
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    |||||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  33543416 tgtgtaattaaaaaaaggtgttaacaaatatactgtcttgatattttcttgataaattttgt 33543477  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 5686340 - 5686276
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgata 79  Q
    |||||||||||| ||||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  5686340 ggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttgata 5686276  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 29414442 - 29414510
Alignment:
Q  17 aggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaatttt 85  Q
    |||||||  ||| ||||||| ||||||||||| ||||| |||||| ||||||||||||||||| |||||    
T  29414442 aggtaatggtgtttaattaaggaaaggtgttaacaaatgcactgttttgaaattttcttgatatatttt 29414510  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 3040310 - 3040238
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3040310 ggaggtaatggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaattttgt 3040238  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 20359967 - 20360061
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||| ||||  |||||||||||||||||||||||||||||| || ||||||||| |||||||||| | ||||| | | |||||||||||||    
T  20359967 caaaggagataatggtgtgtaattaaagaaaggtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttc 20360061  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 30700920 - 30700848
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 87  Q
    |||||||||  |||||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  30700920 ggaggtaatgttgtgtaattaagaaaaggtgttagcaaatacactgtcttaaaatttttttgataaattttgt 30700848  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 30735371 - 30735282
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||||||||  || ||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||||    
T  30735371 ggaggtaatgctgggtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattt 30735282  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 30071840 - 30071919
Alignment:
Q  26 tgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||| | |||||| ||||||||||||| |||||| |||||||||| ||||||||||| | | |||||||||||||    
T  30071840 tgtgtaattgaggaaaggagttagcaaatacattgtcttaaaattttcttcataaattttgtcactctatctatcatttc 30071919  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 25493873 - 25493966
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcattt 104  Q
    |||||||||||||  ||||||||||| |||| || ||| |||||| |||||||||||||||||| |||| || |||| | | ||||||||||||    
T  25493873 caaaggaggtaatggtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 40519236 - 40519326
Alignment:
Q  15 ggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||| ||||||||||||  |||  | || |||||||||||||||| ||||||||||||||| |||||| | | ||| |||||||||    
T  40519236 ggaggtaatgatgtgtaattaagaaaaaatattggcaaatacactgtcttaaaattttcttgataatttttgtcactgtatttatcatttc 40519326  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 34280143 - 34280066
Alignment:
Q  28 tgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    ||||||||| ||||| ||||| ||||||||||| ||| |||| || |||||||||| ||| | | |||||||||||||    
T  34280143 tgtaattaaggaaagatgttaacaaatacactgacttaaaatattattgataaattctgtcactgtatctatcatttc 34280066  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 9666943 - 9666899
Alignment:
Q  38 gaaaggtgttagcaaatacactgtcttgaaattttcttgataaat 82  Q
    |||||||||||||||||||||  |||| |||||||||||||||||    
T  9666943 gaaaggtgttagcaaatacaccatcttaaaattttcttgataaat 9666899  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 24402154 - 24402193
Alignment:
Q  66 aaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  24402154 aaattttcttgataaattttgtcattgtatctatcatttc 24402193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 19244 - 19338
Alignment:
Q  11 caaaggaggtaataatgtgtaattaaagaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtgattatatctatcatttc 105  Q
    |||||||||||||| |||||  ||||| |||||| ||| ||||||||| | ||| |||||||||| ||||||||  | |  ||||||||||||||    
T  19244 caaaggaggtaatagtgtgtcgttaaaaaaaggtattaacaaatacacagacttaaaattttcttaataaatttgatcacaatatctatcatttc 19338  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 227607 - 227575
Alignment:
Q  447 aaaagtgattttcattttgataaacaaacacaa 479  Q
    |||||||||||||||| ||||||||||||||||    
T  227607 aaaagtgattttcattctgataaacaaacacaa 227575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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