View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_13 (Length: 495)
Name: NF11901_high_13
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 38569598 - 38569127
Alignment:
| Q |
12 |
acagatgaggagctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctactgtagcatttgctactgaacgatattcagcttc |
111 |
Q |
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| T |
38569598 |
acagatgaggagctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctgctgcagcatttgctactgaatgatattcagcttc |
38569499 |
T |
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| Q |
112 |
cggtgatgatcgtgccacagttctctgtctcttggatagccacaacactgaattacctccaaaataaattacctccacgacact-gaa------tcatct |
204 |
Q |
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| T |
38569498 |
cggtgatgatcgtgccacagttctctgtctcttggatagccacgacactgaattacctccaaaataaattacaaacgttaaggtagaagtgtgatcatct |
38569399 |
T |
|
| Q |
205 |
aagtagtctccccaatctgcatcactaaaggcatgtaatttcatatgagccggtttcttaagtttcaagccataattgaaggggagtttgagatattgaa |
304 |
Q |
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| T |
38569398 |
aagtagtctccccaatttgcatcactaaaggcatgtaatttcatatgagccggtttcttaagtttcaagccataattgaaggggagtttgagatattgaa |
38569299 |
T |
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| Q |
305 |
tgactcgtttaagttgccgaaaatggatctgtgtgggctggtgcatgaattgtgacagtttattgatggaaaatgagaggtctggacaagtcaaggtgtt |
404 |
Q |
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| T |
38569298 |
tgactcgtttaagttgctgaaaagggatctgtgtgggctggtgcatgaattgtgacagtttattgatggaaaatgagaggtctggacgagtcaaggtgtt |
38569199 |
T |
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| Q |
405 |
gtatcgcaaagttccaataatgttgcaaaacattttggaatcagcttgtgtagatccgaccactagttgagg |
476 |
Q |
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| T |
38569198 |
gtatcgcaaagttccaataatgttgcgaaacattttggaatcagcttgtgtagatccgaccactagttgagg |
38569127 |
T |
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