View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_15 (Length: 467)
Name: NF11901_high_15
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 228 - 449
Target Start/End: Original strand, 31408634 - 31408855
Alignment:
| Q |
228 |
atcgtatattttaccattgcagagaagagttggccacctagccaagcaccaccaccaggactcacagattgctcaatgatagcgatcttaacgttaggat |
327 |
Q |
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| T |
31408634 |
atcgtatattttaccattgcagagaagagttggccacctagccaagcaccaccaccaggactcacagattgctcaatgatagcgatcttaacgttaggat |
31408733 |
T |
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| Q |
328 |
tcttgctaagctcataagcacatgacaaaccagcagaaccagcaccaacgatgacgacgtcggtatcggcatgagtcaccatgtccgtcatgtacctacg |
427 |
Q |
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| T |
31408734 |
tcttgctaagctcataagcacatgacaaaccagcagaaccagcaccaacgatgacgacgtcggtatcggcatgagtcaccatgtccgtcatgtacctacg |
31408833 |
T |
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| Q |
428 |
agtcatctcacgtgccacaatt |
449 |
Q |
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| T |
31408834 |
agtcatctcacgtgccacaatt |
31408855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 31408492 - 31408576
Alignment:
| Q |
79 |
taaaacacaataagacatatttcaaatgaatcacaccaaaaagtcatagatggccactactaattaatgtgcagtaacaataactatggtat |
170 |
Q |
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| T |
31408492 |
taaaacataataagacatatatcaaatgaatcacaccaaaaagtcatagatggccac-------taatgtgcagtaacaataattatggtat |
31408576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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