View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_18 (Length: 432)
Name: NF11901_high_18
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 24506539 - 24506443
Alignment:
| Q |
17 |
cagagaagaataaggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaac |
113 |
Q |
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| T |
24506539 |
cagagaagaataaggcacttgatgccaacacaaaattaatccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaatcaac |
24506443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 24518013 - 24517888
Alignment:
| Q |
189 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatat |
288 |
Q |
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| T |
24518013 |
atcatctaccttgatcatgtaacagaggaagagttagtcaaccaattttcataatataccaaaaaattccataaggagagaaccttagcttgcagaatat |
24517914 |
T |
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| Q |
289 |
ggtagctttgtgattacatatgcatg |
314 |
Q |
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| T |
24517913 |
ggtagctttgtgattacatatgcatg |
24517888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 24517750 - 24517640
Alignment:
| Q |
311 |
catgcttaccaccacagttatcaacaggtaaattttcagttgcat------ttctccaaatgcctctcgttgtttgttcttctgttggagtacaaagacc |
404 |
Q |
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| T |
24517750 |
catgcttaccaccacagttatcaacgcgtaaattttcagttgcatcaagcttcctccaaacgtctctcgttgtttgttcttctgttaaagtacaaagacc |
24517651 |
T |
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| Q |
405 |
gcctcacaaat |
415 |
Q |
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| T |
24517650 |
gcctcacaaat |
24517640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 24518145 - 24518089
Alignment:
| Q |
56 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaaccaa |
112 |
Q |
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| T |
24518145 |
tcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaaccaa |
24518089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 35456099 - 35456013
Alignment:
| Q |
228 |
aaccagtcatcataacataccaaaaacttgcaaaaggggagaaccttagctcgaagaatatggtagctttgtgattacatatgcatg |
314 |
Q |
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| T |
35456099 |
aaccagtcttcataacataccaaaaacttgcataaggagataaccttagctagcagaatatggtagctttgtgattacagatgcatg |
35456013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 35456210 - 35456163
Alignment:
| Q |
68 |
catgcttcaaaacctgcacaatttacattcaactcacacaaccaactg |
115 |
Q |
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| T |
35456210 |
catgattcaaaacctgcacaatttacattcaattcacacaaccaactg |
35456163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 35455824 - 35455782
Alignment:
| Q |
358 |
ctccaaatgcctctcgttgtttgttcttctgttggagtacaaa |
400 |
Q |
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| T |
35455824 |
ctccaaacgcctctcgttgtttgttcttcaattggagtacaaa |
35455782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 29082286 - 29082248
Alignment:
| Q |
69 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
107 |
Q |
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| T |
29082286 |
atgcttcaaaacctgcacaatttacattcaactcacaca |
29082248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 29082173 - 29082101
Alignment:
| Q |
189 |
atcatctcccttgatcttgtaagcgaggaagagttagtcaaccagtcatcataacataccaaaaacttgcaaa |
261 |
Q |
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|||||||||| ||| | ||||| |||||||||||||| |||||||| || ||| || ||||||||||||||| |
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| T |
29082173 |
atcatctcccatgagcctgtaacagaggaagagttagtaaaccagtcttcctaagattccaaaaacttgcaaa |
29082101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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