View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_high_19 (Length: 424)

Name: NF11901_high_19
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_high_19
NF11901_high_19
[»] chr8 (10 HSPs)
chr8 (27-413)||(34877843-34878227)
chr8 (1-31)||(10934596-10934626)
chr8 (1-31)||(33070282-33070312)
chr8 (1-29)||(10934720-10934748)
chr8 (1-29)||(13496552-13496580)
chr8 (1-29)||(23627661-23627689)
chr8 (1-29)||(24287780-24287808)
chr8 (1-29)||(31810329-31810357)
chr8 (245-277)||(32880790-32880822)
chr8 (1-29)||(40640273-40640301)
[»] chr2 (12 HSPs)
chr2 (1-36)||(26229562-26229597)
chr2 (1-31)||(11726489-11726519)
chr2 (1-30)||(8510622-8510651)
chr2 (1-30)||(13994306-13994335)
chr2 (1-30)||(31101943-31101972)
chr2 (1-29)||(15119894-15119922)
chr2 (1-29)||(15446774-15446802)
chr2 (1-29)||(26229441-26229469)
chr2 (1-29)||(26234141-26234169)
chr2 (1-29)||(32316413-32316441)
chr2 (1-29)||(38465784-38465812)
chr2 (1-29)||(41805269-41805297)
[»] chr6 (4 HSPs)
chr6 (1-31)||(31398343-31398373)
chr6 (1-30)||(15517085-15517114)
chr6 (1-30)||(18097054-18097083)
chr6 (1-30)||(34379730-34379759)
[»] chr3 (13 HSPs)
chr3 (1-31)||(9170210-9170240)
chr3 (1-31)||(38677558-38677588)
chr3 (1-30)||(7882275-7882304)
chr3 (1-30)||(12708797-12708826)
chr3 (1-30)||(52215997-52216026)
chr3 (1-29)||(331915-331943)
chr3 (1-29)||(8504845-8504873)
chr3 (1-29)||(9170107-9170135)
chr3 (1-29)||(10872789-10872817)
chr3 (1-29)||(12708683-12708711)
chr3 (1-29)||(36447973-36448001)
chr3 (1-29)||(45736682-45736710)
chr3 (1-29)||(54690947-54690975)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-30)||(4490-4519)
scaffold0059 (1-29)||(4369-4397)
[»] chr7 (6 HSPs)
chr7 (1-30)||(5950311-5950340)
chr7 (5-34)||(23797469-23797498)
chr7 (1-29)||(10095714-10095742)
chr7 (1-29)||(25245260-25245288)
chr7 (1-29)||(36547582-36547610)
chr7 (1-29)||(43103067-43103095)
[»] chr1 (8 HSPs)
chr1 (1-30)||(23398413-23398442)
chr1 (1-29)||(14214545-14214573)
chr1 (1-29)||(14214646-14214674)
chr1 (1-29)||(33939414-33939442)
chr1 (1-29)||(39216098-39216126)
chr1 (1-29)||(39216216-39216244)
chr1 (1-29)||(45115287-45115315)
chr1 (1-29)||(52923318-52923346)
[»] chr5 (6 HSPs)
chr5 (1-29)||(71254-71282)
chr5 (1-29)||(7306553-7306581)
chr5 (1-29)||(10437754-10437782)
chr5 (1-29)||(14772543-14772571)
chr5 (1-29)||(16441608-16441636)
chr5 (1-29)||(26141750-26141778)
[»] chr4 (8 HSPs)
chr4 (1-29)||(6126769-6126797)
chr4 (1-29)||(19934633-19934661)
chr4 (1-29)||(24851527-24851555)
chr4 (1-29)||(33036981-33037009)
chr4 (1-29)||(36072565-36072593)
chr4 (1-29)||(54164808-54164836)
chr4 (1-29)||(54164930-54164958)
chr4 (1-29)||(54713093-54713121)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 27 - 413
Target Start/End: Original strand, 34877843 - 34878227
Alignment:
Q  27 gtacacattaaaagatagcgacggtatcaatgaagtttggcacaatatgcgaccttacccc-----ctctctctctaggttaatcagataaagtgtttta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||| ||||||||||||||    
T  34877843 gtacacattaaaagatagcgacggtatcaatgaagtttggcacaatatgcgaccttacccccctctctctctctctaggttaatcggataaagtgtttta 34877942  T
Q  122 atgtctcatcttagggttaataatcaaccaattcaacccatttgagttggattggtttgatgatattagtttgagacttgagagtttcttcttctttgat 221  Q
    |||||||||||||||||||||||||||||||  ||| ||||          |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  34877943 atgtctcatcttagggttaataatcaaccaacccaatccat----------ttggtttggtgatattagtttgagacttgagagtctcttcttctttgat 34878032  T
Q  222 gttttaagtttaattccg-----atgccatttaggtaggctaatttaatttctttaaaaaattaaagaaccaatgtcgaactcaagtcgtgttttcagtt 316  Q
    ||||||||||||||||||     ||  |||||||||||| || |||| ||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||    
T  34878033 gttttaagtttaattccgatatcattacatttaggtaggttagtttagtttcttttaaaaaataatgaaccaatgtcgaactcaagtcgagttttcagtt 34878132  T
Q  317 gaactaannnnnnngttgagtagaggttaattgtgtcaaatttgactcaactacactcatttgcagctcaatattgttctaccgcggtatccatctc 413  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34878133 gaactaa--tttttgttgagtagaggttaattgtgtcaaatttgactcaactacactcatttgcagctcaatattgttctaccgcggtatccatctc 34878227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 10934626 - 10934596
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  10934626 tttgcttataatagtgaccggagggtgtaca 10934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33070282 - 33070312
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  33070282 tttgcttataatagtgaccggagggtgtaca 33070312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10934720 - 10934748
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10934720 tttgcttataatagtgaccggagggtgta 10934748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13496552 - 13496580
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  13496552 tttgcttataatagtgaccggagggtgta 13496580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23627689 - 23627661
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  23627689 tttgcttataatagtgaccggagggtgta 23627661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24287808 - 24287780
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  24287808 tttgcttataatagtgaccggagggtgta 24287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31810357 - 31810329
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  31810357 tttgcttataatagtgaccggagggtgta 31810329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 32880790 - 32880822
Alignment:
Q  245 atttaggtaggctaatttaatttctttaaaaaa 277  Q
    |||||||||||||||||||| ||||||||||||    
T  32880790 atttaggtaggctaatttaacttctttaaaaaa 32880822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40640301 - 40640273
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  40640301 tttgcttataatagtgaccggagggtgta 40640273  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26229562 - 26229597
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtacacatta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26229562 tttgcttataatagtgaccggagggtgtacatatta 26229597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11726519 - 11726489
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  11726519 tttgcttataatagtgaccggagggtgtaca 11726489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 8510622 - 8510651
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  8510622 tttgcttataatagtgaccggagggtgtac 8510651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13994306 - 13994335
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  13994306 tttgcttataatagtgaccggagggtgtac 13994335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31101972 - 31101943
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  31101972 tttgcttataatagtgaccggagggtgtac 31101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15119894 - 15119922
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  15119894 tttgcttataatagtgaccggagggtgta 15119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15446802 - 15446774
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  15446802 tttgcttataatagtgaccggagggtgta 15446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26229469 - 26229441
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26229469 tttgcttataatagtgaccggagggtgta 26229441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26234141 - 26234169
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26234141 tttgcttataatagtgaccggagggtgta 26234169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32316441 - 32316413
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  32316441 tttgcttataatagtgaccggagggtgta 32316413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38465812 - 38465784
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  38465812 tttgcttataatagtgaccggagggtgta 38465784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41805297 - 41805269
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  41805297 tttgcttataatagtgaccggagggtgta 41805269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31398343 - 31398373
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  31398343 tttgcttataatagtgaccggagggtgtaca 31398373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15517114 - 15517085
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  15517114 tttgcttataatagtgaccggagggtgtac 15517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18097083 - 18097054
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  18097083 tttgcttataatagtgaccggagggtgtac 18097054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34379759 - 34379730
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  34379759 tttgcttataatagtgaccggagggtgtac 34379730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 9170210 - 9170240
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  9170210 tttgcttataatagtgaccggagggtgtaca 9170240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38677588 - 38677558
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtaca 31  Q
    |||||||||||||||||||||||||||||||    
T  38677588 tttgcttataatagtgaccggagggtgtaca 38677558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 7882304 - 7882275
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  7882304 tttgcttataatagtgaccggagggtgtac 7882275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 12708797 - 12708826
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  12708797 tttgcttataatagtgaccggagggtgtac 12708826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 52215997 - 52216026
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  52215997 tttgcttataatagtgaccggagggtgtac 52216026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 331915 - 331943
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  331915 tttgcttataatagtgaccggagggtgta 331943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8504873 - 8504845
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  8504873 tttgcttataatagtgaccggagggtgta 8504845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9170135 - 9170107
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  9170135 tttgcttataatagtgaccggagggtgta 9170107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10872789 - 10872817
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10872789 tttgcttataatagtgaccggagggtgta 10872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12708711 - 12708683
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  12708711 tttgcttataatagtgaccggagggtgta 12708683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36447973 - 36448001
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36447973 tttgcttataatagtgaccggagggtgta 36448001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45736710 - 45736682
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  45736710 tttgcttataatagtgaccggagggtgta 45736682  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54690947 - 54690975
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54690947 tttgcttataatagtgaccggagggtgta 54690975  T

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Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4490 - 4519
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  4490 tttgcttataatagtgaccggagggtgtac 4519  T

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Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4397 - 4369
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  4397 tttgcttataatagtgaccggagggtgta 4369  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5950311 - 5950340
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  5950311 tttgcttataatagtgaccggagggtgtac 5950340  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 23797469 - 23797498
Alignment:
Q  5 cttataatagtgaccggagggtgtacacat 34  Q
    ||||||||||||||||||||||||||||||    
T  23797469 cttataatagtgaccggagggtgtacacat 23797498  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10095742 - 10095714
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10095742 tttgcttataatagtgaccggagggtgta 10095714  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25245260 - 25245288
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  25245260 tttgcttataatagtgaccggagggtgta 25245288  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36547610 - 36547582
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36547610 tttgcttataatagtgaccggagggtgta 36547582  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43103095 - 43103067
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  43103095 tttgcttataatagtgaccggagggtgta 43103067  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 23398442 - 23398413
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  23398442 tttgcttataatagtgaccggagggtgtac 23398413  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14214573 - 14214545
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14214573 tttgcttataatagtgaccggagggtgta 14214545  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14214646 - 14214674
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14214646 tttgcttataatagtgaccggagggtgta 14214674  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33939414 - 33939442
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  33939414 tttgcttataatagtgaccggagggtgta 33939442  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39216126 - 39216098
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  39216126 tttgcttataatagtgaccggagggtgta 39216098  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39216216 - 39216244
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  39216216 tttgcttataatagtgaccggagggtgta 39216244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45115287 - 45115315
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  45115287 tttgcttataatagtgaccggagggtgta 45115315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52923346 - 52923318
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  52923346 tttgcttataatagtgaccggagggtgta 52923318  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 71282 - 71254
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  71282 tttgcttataatagtgaccggagggtgta 71254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7306553 - 7306581
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  7306553 tttgcttataatagtgaccggagggtgta 7306581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10437754 - 10437782
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10437754 tttgcttataatagtgaccggagggtgta 10437782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14772571 - 14772543
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14772571 tttgcttataatagtgaccggagggtgta 14772543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16441636 - 16441608
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  16441636 tttgcttataatagtgaccggagggtgta 16441608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26141778 - 26141750
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26141778 tttgcttataatagtgaccggagggtgta 26141750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6126769 - 6126797
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  6126769 tttgcttataatagtgaccggagggtgta 6126797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19934661 - 19934633
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  19934661 tttgcttataatagtgaccggagggtgta 19934633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24851527 - 24851555
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  24851527 tttgcttataatagtgaccggagggtgta 24851555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33036981 - 33037009
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  33036981 tttgcttataatagtgaccggagggtgta 33037009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36072593 - 36072565
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36072593 tttgcttataatagtgaccggagggtgta 36072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54164836 - 54164808
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54164836 tttgcttataatagtgaccggagggtgta 54164808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54164930 - 54164958
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54164930 tttgcttataatagtgaccggagggtgta 54164958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54713121 - 54713093
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54713121 tttgcttataatagtgaccggagggtgta 54713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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