View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_20 (Length: 422)
Name: NF11901_high_20
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 12340199 - 12339854
Alignment:
| Q |
13 |
agatgatacaccataatgtaacagtgatgatgataacaacggacagaagacaaatatttaagtaaaaaatggggaaaactaagggtgaaa-ttgtgggaa |
111 |
Q |
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| T |
12340199 |
agatgatacaccataatggaacagtgatgatgatgacaacggagagaagacaaatatttaagtaaaaaatggggaaaactaagggtgaaaattgggggaa |
12340100 |
T |
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| Q |
112 |
aggnnnnnnnnnnttatgttaataacctttctacctcttgcnnnnnnnnnnc--catatgacatcagatgcaaatagaccttgccacattaacgcttaac |
209 |
Q |
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| T |
12340099 |
aggaaaaaaaaaattatgttaataacctttctacctcatgcaaaaaaaaaaaaacatatgacgtcagatgccaatagaccttgccacattaacggttaac |
12340000 |
T |
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| Q |
210 |
aaattgatgggggtatttgtcatttcgaaaatttgagattgagggaaatatttacaagtatttaaaatttcaagggaatattttgctattcatttnnnnn |
309 |
Q |
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| T |
12339999 |
aaattgatgggggtatttgtcatttcgaaaatttgagattgaaggaaatatttgcaagtatttaaaatttcagaggaaaattttgctattcatttaaaaa |
12339900 |
T |
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| Q |
310 |
nnntctgttcagaatgcatagaaaacttaaacgtatatttcaaaaa |
355 |
Q |
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| T |
12339899 |
aaatctgttcagaatgcatagaaaacttaaacgaatatttaaaaaa |
12339854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 12339833 - 12339781
Alignment:
| Q |
353 |
aaatcaaactagcggtacatctcccaactagattatatttagtgtactttaag |
405 |
Q |
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| T |
12339833 |
aaatcaaactagcggtacatctcccaactagattatatttagtgtactttaag |
12339781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 12347817 - 12347765
Alignment:
| Q |
249 |
tgagggaaatatttacaagtatttaaaatttcaagggaatattttgctattca |
301 |
Q |
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| T |
12347817 |
tgagggaaatatttgcaagaatttaaaattttaaggggttattttcctattca |
12347765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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