View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_24 (Length: 381)
Name: NF11901_high_24
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 13704672 - 13705024
Alignment:
| Q |
11 |
caaaggccaatggacaacgaatgaggacagttatataaaatcatttaaaattttatactgtctctccaacaaataattttcatagttttagtatggattg |
110 |
Q |
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||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13704672 |
caaaggccaatggacaacggatgaggataggtatataaaatcatttaaaattttatactgtctctccaacaaataattttcatagttttagtatggatta |
13704771 |
T |
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| Q |
111 |
aatatatactttattgggtataaatatgtttattggtttagtatttaaatttggttcattctatctgaactacgtacatttgtttatttattatcaattg |
210 |
Q |
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| T |
13704772 |
aatatatactttattgggtataaatatgtttattggtttagtatttaaatttggttcattctatctgaactatat---tttgtttatttattatcaattg |
13704868 |
T |
|
| Q |
211 |
ttcttatatggtgaacaatgaatagagttcttctatttttgtaggattcttattcaattggttgatctctttgggctgagaaaatggtccaagattgcta |
310 |
Q |
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| T |
13704869 |
ttcgcatatggtgaacaatgaataacatttttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaaatggtccaagattgcta |
13704968 |
T |
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| Q |
311 |
agtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
366 |
Q |
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| T |
13704969 |
agtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
13705024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 13642292 - 13642633
Alignment:
| Q |
11 |
caaaggccaatggacaacgaatgaggacagttatataaaatcatttaaaattttatactgtctctccaacaaataattttcatagttttagtatggattg |
110 |
Q |
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| T |
13642292 |
caaaggccaatggacaacggatgaggacaggtatataaaatcatttaaaattttata-----------acaaataattttgatagtgttagtatggattg |
13642380 |
T |
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| Q |
111 |
aatatatactttattgggtataaatatgtttattggtttagtatttaaatttggttcattctatctgaactacgtacatttgtttatttattatcaattg |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
13642381 |
aatatatactttattgggtataaatatgttaattggtttagtatttaaatttggttcattctatctgaactatat---tttgtttatttattatcaattg |
13642477 |
T |
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| Q |
211 |
ttcttatatggtgaacaatgaatagagttcttctatttttgtaggattcttattcaattggttgatctctttgggctgagaaaatggtccaagattgcta |
310 |
Q |
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||| ||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
13642478 |
ttcacatatgatgaacaatgaatagcattcttatgtttttgtaggattcttattcaattggttgatcgcttcgggctgagaaattggtccaagattgcta |
13642577 |
T |
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| Q |
311 |
agtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
366 |
Q |
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| T |
13642578 |
agtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
13642633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 13469136 - 13469072
Alignment:
| Q |
302 |
agattgctaagtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
366 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
13469136 |
agattgctaagtctatgaatggaagaatcggaaaacagtgcagggagagatggtacaaccatctt |
13469072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 17176221 - 17176099
Alignment:
| Q |
244 |
tatttttgtaggattcttattcaattggttgatctctttgggctgagaaaatggtccaagattgctaagtatatgaatggcagaatcggaaaacagtgca |
343 |
Q |
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| T |
17176221 |
tatttttgtagggttcttgtccaattggtggatcactttgggcttagaaattggtctcgtattgctaagtttctgaaaggaagaattggaaaacaatgca |
17176122 |
T |
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| Q |
344 |
gggagagatggaataaccatctt |
366 |
Q |
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| T |
17176121 |
gagagagatggaataatcatctt |
17176099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 34656525 - 34656403
Alignment:
| Q |
244 |
tatttttgtaggattcttattcaattggttgatctctttgggctgagaaaatggtccaagattgctaagtatatgaatggcagaatcggaaaacagtgca |
343 |
Q |
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||||||| |||| ||||| |||||||||| ||| |||||| || |||||||||||| ||||||| ||||| ||||| || || || ||||||||||| | |
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| T |
34656525 |
tatttttttagggttcttgttcaattggtgaatcactttggtcttagaaaatggtcccagattgcgaagtacatgaaaggtaggattggaaaacagtgta |
34656426 |
T |
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| Q |
344 |
gggagagatggaataaccatctt |
366 |
Q |
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| T |
34656425 |
gagagagatggaataaccatctt |
34656403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 25522137 - 25522198
Alignment:
| Q |
305 |
ttgctaagtatatgaatggcagaatcggaaaacagtgcagggagagatggaataaccatctt |
366 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
25522137 |
ttgctaagtttatgaatggcagaagcggaaaacagtgtagggagagatggcataaccatctt |
25522198 |
T |
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