View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_26 (Length: 373)
Name: NF11901_high_26
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 1096248 - 1096097
Alignment:
| Q |
19 |
taaccaacttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttatacatgactgattgtttgtaaagatcattgatgtt |
118 |
Q |
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| T |
1096248 |
taaccaacttaaggatccgattttgttcaaattttctgttgcatcctgctttagtatatgtgttatacatgactgattgtttgtaaagatcattgatgtt |
1096149 |
T |
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| Q |
119 |
tgtcttaccttagaatcttggatgtgggctaccttcagttttcatgtcatgt |
170 |
Q |
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| T |
1096148 |
tgtcttaccttagaatcttggatgtgggctaccttcagttttcatgtcatgt |
1096097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 194 - 370
Target Start/End: Complemental strand, 1095662 - 1095486
Alignment:
| Q |
194 |
tgatgccctagctaatataggcttaaatattgttggnnnnnnnnggtggcaagatgcaactaacattgttagacaggatgttattaaaaatatgttggga |
293 |
Q |
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| T |
1095662 |
tgatgccctagctaatataggcttaaatattgttggtttttttttgtggcaagatgcaactaacattgttagacaggatgctattaaaaatatgttggga |
1095563 |
T |
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| Q |
294 |
atgcccaattataggttcaccaccttttgaaaaggtttgaggtatatcccacttttcttccttttgtatgctttctt |
370 |
Q |
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| T |
1095562 |
atgcccaattataggttcaccaccttttgaaaaggtttggggtatatcccacttttcttccttttgtatgctttctt |
1095486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 1075920 - 1076076
Alignment:
| Q |
19 |
taaccaacttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttata-----catgactgattgtttgtaaagatcattg |
113 |
Q |
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| T |
1075920 |
taaccaacttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttatacataccatgactgattgtttgtaaagatcattg |
1076019 |
T |
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| Q |
114 |
atgtttgtcttaccttagaatcttggatgtgggctaccttcagttttcatgtcatgt |
170 |
Q |
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| T |
1076020 |
atgtctgttttaccttagaatcttgcatgtgggctatctccagttttcatgtcatgt |
1076076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 19195998 - 19195949
Alignment:
| Q |
282 |
aatatgttgggaatgcccaattataggttcaccaccttttgaaaaggttt |
331 |
Q |
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| T |
19195998 |
aataggttgggtatgcccaactttagattcaccaccttttgaaaaggttt |
19195949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 5128629 - 5128473
Alignment:
| Q |
19 |
taaccaacttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttatacat-----gactgattgtttgtaaagatcattg |
113 |
Q |
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| T |
5128629 |
taaccaacttaaggatccgactttgttcaaattttctgttgcaccctgctttagtatatgtgttatacataccatgactgattgtttgtaaagatcattg |
5128530 |
T |
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| Q |
114 |
atgtttgtcttaccttagaatcttggatgtgggctaccttcagttttcatgtcatgt |
170 |
Q |
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| T |
5128529 |
atgtttgttttaccttagaatcttgcatgtgggctatctccagttttcatgtcatgt |
5128473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 370
Target Start/End: Original strand, 20133298 - 20133428
Alignment:
| Q |
238 |
ggtggcaagatgcaactaacattgttagacaggatgttattaaaaatatgttgggaatgcccaattataggttcaccaccttttgaaaaggtttgaggta |
337 |
Q |
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| T |
20133298 |
ggtggcaagaggcaccaaacattgttaggcaggaaatagttaagaatatgttgggaatgtccaactataagttcacaaccttttgaaaaggtttgggtta |
20133397 |
T |
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| Q |
338 |
tatcccacttttcttccttttgtatgctttctt |
370 |
Q |
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| T |
20133398 |
tatcccacttttcttc--tttgtatgctttctt |
20133428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 41304419 - 41304345
Alignment:
| Q |
92 |
tgattgtttgtaaagatcattgatgtttgtcttaccttagaatcttggatgtgggctaccttcagttttcatgtc |
166 |
Q |
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| T |
41304419 |
tgattgttggtaaagatcattaatgtgtgttttacctttgagtcttgcatgaggcctaccttcggttctcatgtc |
41304345 |
T |
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