View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_high_3 (Length: 775)

Name: NF11901_high_3
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_high_3
NF11901_high_3
[»] chr2 (1 HSPs)
chr2 (89-760)||(521018-521693)


Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 89 - 760
Target Start/End: Original strand, 521018 - 521693
Alignment:
Q  89 gattggaaagtgagaaagaaaaccaccgaaaaagttaccagtgtctaagattggtgtgtgagagttcctgcaatagcaataaagcttgatctaacttaga 188  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521018 gattggaaagtgagaaagaaaaccactgaaaaaattaccagtgtctaagattggtgtgtgagagttcctgcaatagcaataaagcttgatctaacttaga 521117  T
Q  189 tatagatatcatctttgtatcagtagcagagaannnnnnnnnnnccagtgtcaacattcaataataatatgcttaccttaattcagttttctatcagaat 288  Q
    |||||||||||||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  521118 tatagatatcatctttgtatcagtagcagagaattttattttttccagtgtgaacattcaataataatatgcttaccttatttcagttttctatcagaat 521217  T
Q  289 ctttggcaacttcattgnnnnnnnnn--attatttatatttaattaacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgt 386  Q
    |||||||||||||||||           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521218 ctttggcaacttcattgtttttttttttattatatatatttaattaacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgt 521317  T
Q  387 tgttggcacaaagcgcgagatggatctctgaaatttgtgtaaattcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgat 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521318 tgttggcacaaagcgcgagatggatctctgaaatttgtgtaaattcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgat 521417  T
Q  487 tgagcatgtcatgattgtaaactcttcatctttctctgatgaaactactattcctaaggggctatatagtggtgcactccatcaatgtggagaggtaata 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521418 tgagcatgtcatgattgtaaactcttcatctttctctgatgaaactactattcctaaggggctatatagtggtgcactccatcaatgtggagaggtaata 521517  T
Q  587 tagcattcttcaattgtaaaatgaaggatgt--tatcttgtgttgaaaaaactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaa 684  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521518 tagcattcttcaattgtaaaatgaaggatgttatatcttgtgttgaaaaaactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaa 521617  T
Q  685 atattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatt 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521618 atattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatt 521693  T

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